Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C08f
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   7.2  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    20   7.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   7.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 252 CT*LDLGHLPGHFFHMLPMLDG 187
           C  L +GH  G    ++PML G
Sbjct: 284 CMMLLIGHWSGCLQFLVPMLQG 305


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 252 CT*LDLGHLPGHFFHMLPMLDG 187
           C  L +GH  G    ++PML G
Sbjct: 252 CMMLLIGHWSGCLQFLVPMLQG 273


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 268 LCFGXCCRDYRSVASLH 318
           +C G  C+D  S A  H
Sbjct: 9   VCLGIACQDVTSAAVNH 25


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 268 LCFGXCCRDYRSVASLH 318
           +C G  C+D  S A  H
Sbjct: 9   VCLGIACQDVTSAAVNH 25


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 8   YILYIPC*LCNTWRLFGKVTSLWRFCTKKSVQ 103
           Y+L +   L     L G    +W FC  KS++
Sbjct: 49  YLLALLYILFTFLALLGNGLVIWIFCAAKSLR 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,894
Number of Sequences: 438
Number of extensions: 2016
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)