Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C08f
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    29   0.63 
At5g52065.1 68418.m06463 hypothetical protein                          28   1.5  
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05...    28   1.5  
At4g17615.2 68417.m02635 calcineurin B-like protein 1 (CBL1) ide...    26   5.9  
At4g17615.1 68417.m02634 calcineurin B-like protein 1 (CBL1) ide...    26   5.9  
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ...    26   5.9  
At5g31752.1 68418.m03682 hypothetical protein                          26   7.7  
At4g24830.1 68417.m03557 arginosuccinate synthase family contain...    26   7.7  

>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -1

Query: 343 SLHRSPARRARKP----PNGNLCNXCR 275
           S H +P+RR R+P      GNLCN C+
Sbjct: 35  SYHDAPSRREREPRRAFSQGNLCNNCK 61


>At5g52065.1 68418.m06463 hypothetical protein
          Length = 406

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 26  C*LCNTWRLFGKVTSLWRFCTKKSVQGSW 112
           C L   WRLF   TSLW      S QGSW
Sbjct: 142 CGLKLIWRLFAAPTSLW--IKGNSSQGSW 168


>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05794:
            T-complex protein 11
          Length = 1097

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 39   ILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRL 182
            ++   LVK L  GD+V    S+   L  +   LAGNN K+  L  T L
Sbjct: 1008 VIANMLVKSLQAGDAVFTHVSQTIYLAIRAAVLAGNNTKRKQLVETML 1055


>At4g17615.2 68417.m02635 calcineurin B-like protein 1 (CBL1)
           identical to calcineurin B-like protein 1 (GI:3309082)
           [Arabidopsis thaliana]
          Length = 171

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = -2

Query: 120 KINQLPWTDFLVQN--LHKLVTLP 55
           KI++L W+DF+ +N  L K++TLP
Sbjct: 125 KIDKLEWSDFVNKNPSLLKIMTLP 148


>At4g17615.1 68417.m02634 calcineurin B-like protein 1 (CBL1)
           identical to calcineurin B-like protein 1 (GI:3309082)
           [Arabidopsis thaliana]
          Length = 213

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = -2

Query: 120 KINQLPWTDFLVQN--LHKLVTLP 55
           KI++L W+DF+ +N  L K++TLP
Sbjct: 167 KIDKLEWSDFVNKNPSLLKIMTLP 190


>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
           WD-40 repeats (PF0400);similar to guanine
           nucleotide-binding protein beta subunit GPBA (SP:P36408)
           [Dictyostelium discoideum (Slime mold)]; similar to
           katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
           [Homo sapiens]
          Length = 418

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +1

Query: 109 LVYFTNIKGLLATISKRAI*IIRD*NSIEHWKHVEEVSRQVAQVKLSTRPSQRL 270
           +V+F  ++ L+   SK  + ++++  S+ HW  + +  ++V  V  S  P+Q+L
Sbjct: 100 IVHF-QLRNLVWATSKHDVYLMQN-YSLMHWSSLLQRGKEVLNVARSVTPTQKL 151


>At5g31752.1 68418.m03682 hypothetical protein
          Length = 416

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +3

Query: 39  ILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRALEACGRS 218
           +LGGC+  LL   D++P+S+       +  + +A  NL    +++  L +   +EA  + 
Sbjct: 238 LLGGCVGPLLPPPDTLPESRKYAEMTSHFLRVVASMNLM---VHSYDLAMRNNMEAGNKL 294

Query: 219 VQAGGPGQ 242
           V+A  P Q
Sbjct: 295 VEAESPIQ 302


>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
           Pfam profile: PF00764 arginosuccinate synthase
          Length = 494

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +3

Query: 81  SVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRALEACGRSVQAGGPGQAKYTAL 260
           +VPK+ S+   L  K  +L GN +  G +  +R   ++A+ A        G G A  T  
Sbjct: 33  AVPKTTSQFQELSLKRSQLVGNAVVTGHVTGSRSCKNQAIRAV-----LSGDGTALTTDS 87

Query: 261 TAAVLRQXLQRL 296
             A LR  L+++
Sbjct: 88  KEAGLRGKLKKV 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,049,291
Number of Sequences: 28952
Number of extensions: 157412
Number of successful extensions: 394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)