Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C07f
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    42   2e-05
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    40   1e-04
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   0.82 
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   3.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   3.3  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   5.8  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.6  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = +1

Query: 151 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 330
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 331 HKR 339
            KR
Sbjct: 57  TKR 59


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = +1

Query: 172 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 339
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KR
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKR 59


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 187 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 330
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 176 CLYHKPPTFLKSSFS 220
           C  H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 41   SITTWYYKFCQVTVNKYNNIFRYQSWPRRTGMTT 142
            S  +W Y+ C +T+N       YQ   RR   TT
Sbjct: 968  SSKSWLYRGCVITINAEYETGDYQMILRRMSGTT 1001


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +1

Query: 250 SDMSLQDYISVKEKYAKYLPHS 315
           SDM ++ + ++K +Y+K +P++
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNT 727


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 35  FKSITTWYYKFCQVT-VNKYNNIFRYQSWPRRTGMTT*PRQAAW 163
           FK+ T+ ++KFC VT  N   +I +   + +  G T  PR   W
Sbjct: 111 FKAETSGWFKFCSVTAANSGLSILKDSFFTKFWG-TGSPRPLPW 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,477
Number of Sequences: 5004
Number of extensions: 23057
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)