Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C07f
(344 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 84 3e-17
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14) 28 1.8
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01) 28 1.8
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 27 4.1
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22) 27 5.4
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) 26 7.1
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08) 26 9.4
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11) 26 9.4
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 26 9.4
SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09) 26 9.4
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 84.2 bits (199), Expect = 3e-17
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +1
Query: 160 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 339
VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 160 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 264
VV + + A ++P+IKLFG+WS DVQVSD+SL
Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40
>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
Length = 556
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 199 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 330
IPE L C DV + LQ+++ + +KY YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552
>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
Length = 1062
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 41 SITTWYYKFCQVTVNKYNNIFRYQSWPRRTGMTT*PRQAA 160
S TTWY +K+ N+ +++S P R T QAA
Sbjct: 719 SSTTWYQVVDTACQHKWRNLHKWRSLPERQRNPTAAEQAA 758
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 223 RWSCYDVQVSDMSLQDYISVKEKYAKYLP 309
RWSC Q + +++ Y+ KE ++ LP
Sbjct: 59 RWSCVTYQAKNQAVECYLPGKEPGSRVLP 87
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 109 PIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKL--FGRWSCYDVQVSDMSLQ 267
P E+ WNDD E V+ +SLP+ + E+ L + +S +VQ+ Q
Sbjct: 210 PHFVEKEWNDDTYE---VMRGMISLPEVIAVGEVGLDFYRNYSKKEVQIEAFEKQ 261
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 303 IFCVLLFNGNVVLQRHIRDLH 241
IFC LF+G +L+RH+ H
Sbjct: 405 IFCRKLFHGKSLLERHVSKRH 425
>SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)
Length = 416
Score = 26.6 bits (56), Expect = 5.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 106 VPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK 285
+PI+ E NDDVA GS + D P IK + Y + + + +Y K
Sbjct: 281 LPIVLGEGINDDVAIPGSYI-------NIKDFPNIKALSEYIKY-LDKNHTAYNEYFQWK 332
Query: 286 EKY 294
KY
Sbjct: 333 RKY 335
>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
Length = 782
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 189 LW*RHGFHNHAACLGYVVIPVLLGHDWYLKML 94
LW + + + CL +++IPVL+ H +YL L
Sbjct: 76 LWTTYSSSSSSVCL-FLLIPVLITHLYYLHSL 106
>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 904
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 245 KSLICLCRTTFPLKRSTQNIYLIQLA-GMH 331
K +I RTTF K ST N+Y++ G+H
Sbjct: 491 KGVIRSRRTTFTFKYSTNNVYVVSGGEGLH 520
>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
Length = 294
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 65 FCQVTVNKYNNIFRYQSWPRRTGMTT 142
FC Y +I Y WP T MTT
Sbjct: 40 FCGFGYQLYKSITFYYEWPTVTAMTT 65
>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
Length = 538
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 65 FCQVTVNKYNNIFRYQSWPRRTGMTT 142
FC Y +I Y WP T MTT
Sbjct: 40 FCGFGYQLYKSITFYYEWPTVTAMTT 65
>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 700
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 175 MSLPQAADIPEIKLFGRWS 231
MS PQ + IP IK G WS
Sbjct: 358 MSQPQGSSIPRIKRRGPWS 376
>SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09)
Length = 682
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 223 RWSCYDVQVSDMSLQDYISVKE 288
RW YD V D+ Q+ I KE
Sbjct: 163 RWEIYDAYVEDLERQEKIKEKE 184
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 110 QSWPRRTGMTT*PRQAAWLWKPCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLK 286
++WP T + T +A W W Y TFL ++ C ++ R T+P K
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRK 757
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 112 IMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE- 288
+ E+ W+ ++ G + T P + +L WS V D ++ ++I
Sbjct: 624 VRIEDEWSSQISPRGGIPQGTRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFIPRNSP 683
Query: 289 KYAKYLPHSAGRYAHKR 339
Y + RYA +R
Sbjct: 684 SYLPIVASGISRYATQR 700
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,810,275
Number of Sequences: 59808
Number of extensions: 170946
Number of successful extensions: 361
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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