Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C07f
(344 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 90 1e-18
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 90 1e-18
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 90 1e-18
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 90 1e-18
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 87 1e-17
AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens ... 30 2.2
AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens ... 30 2.2
M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein. 28 9.0
M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte a... 28 9.0
BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibilit... 28 9.0
BC073959-1|AAH73959.1| 524|Homo sapiens VPS16 protein protein. 28 9.0
BC021291-1|AAH21291.2| 371|Homo sapiens VPS16 protein protein. 28 9.0
BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein. 28 9.0
BC012422-1|AAH12422.1| 415|Homo sapiens VPS16 protein protein. 28 9.0
AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen pr... 28 9.0
AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen pr... 28 9.0
AL834401-1|CAD39063.1| 694|Homo sapiens hypothetical protein pr... 28 9.0
AL161656-9|CAI12123.1| 525|Homo sapiens vacuolar protein sortin... 28 9.0
AL161656-8|CAI12122.1| 274|Homo sapiens vacuolar protein sortin... 28 9.0
AL161656-6|CAI12120.1| 695|Homo sapiens vacuolar protein sortin... 28 9.0
AL161656-5|CAC21465.1| 839|Homo sapiens vacuolar protein sortin... 28 9.0
AK055787-1|BAB71013.1| 695|Homo sapiens protein ( Homo sapiens ... 28 9.0
AF308801-1|AAG34678.1| 839|Homo sapiens vacuolar protein sortin... 28 9.0
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 184 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 339
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KR
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 184 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 339
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KR
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 184 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 339
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KR
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 184 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 339
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KR
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +1
Query: 184 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 330
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA 57
>AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ44741 fis, clone BRACE3027931. ).
Length = 398
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 239 MCKSLICLCRTTFPLKRSTQNIYLIQLA 322
+CKS C+C +T + ST+ Y QLA
Sbjct: 259 VCKSTYCICNSTHCVCNSTRTAYATQLA 286
>AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ12986 fis, clone NT2RP3000055. ).
Length = 171
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 239 MCKSLICLCRTTFPLKRSTQNIYLIQLA 322
+CKS C+C +T + ST+ Y QLA
Sbjct: 32 VCKSTYCICNSTHCVCNSTRTAYATQLA 59
>M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKY 303
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF 67
>M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte
antigen beta chain protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKY 303
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF 67
>BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibility
complex, class II, DP beta 1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKY 303
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF 67
>BC073959-1|AAH73959.1| 524|Homo sapiens VPS16 protein protein.
Length = 524
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 154 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 187
>BC021291-1|AAH21291.2| 371|Homo sapiens VPS16 protein protein.
Length = 371
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 1 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 34
>BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKY 303
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF 67
>BC012422-1|AAH12422.1| 415|Homo sapiens VPS16 protein protein.
Length = 415
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 45 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 78
>AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKY 303
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF 67
>AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKY 303
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARF 67
>AL834401-1|CAD39063.1| 694|Homo sapiens hypothetical protein
protein.
Length = 694
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 324 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 357
>AL161656-9|CAI12123.1| 525|Homo sapiens vacuolar protein sorting
16 (yeast) protein.
Length = 525
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 155 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 188
>AL161656-8|CAI12122.1| 274|Homo sapiens vacuolar protein sorting
16 (yeast) protein.
Length = 274
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 207 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 240
>AL161656-6|CAI12120.1| 695|Homo sapiens vacuolar protein sorting
16 (yeast) protein.
Length = 695
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 325 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 358
>AL161656-5|CAC21465.1| 839|Homo sapiens vacuolar protein sorting
16 (yeast) protein.
Length = 839
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 469 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 502
>AK055787-1|BAB71013.1| 695|Homo sapiens protein ( Homo sapiens
cDNA FLJ31225 fis, clone KIDNE2004344, weakly similar to
Vacuolar protein sorting-associated protein. ).
Length = 695
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 325 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 358
>AF308801-1|AAG34678.1| 839|Homo sapiens vacuolar protein sorting
protein 16 protein.
Length = 839
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 163 VVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQD 270
+ E + LP+ + I W+CY VQ D+S +D
Sbjct: 469 ICEYLRLPEVQGVSRI--LAHWACYKVQQKDVSDED 502
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,018,651
Number of Sequences: 237096
Number of extensions: 802209
Number of successful extensions: 1395
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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