Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   2.2  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   5.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   6.6  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          24   8.7  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 351 CTIGLKGLMGTLHLINLE 404
           C++ LK L GTLH+ ++E
Sbjct: 345 CSVSLKSLKGTLHIPDIE 362


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = -1

Query: 345 SNYVKPHLFGTIHHFLRAKLHFLLN*IQIDFHPICYCLF*LLHQLHPLNFVFDYEILEAF 166
           S+YV P+     H+ L  +  F    +Q+      Y  F +   L   NF F Y +    
Sbjct: 2   SSYV-PNTLSVYHNLLILEASFRKTYLQLQVRRQKYMAFYV--SLLVWNFYFGYRVFYRI 58

Query: 165 SLKSQISCEEHICLL 121
           S  S I     +CLL
Sbjct: 59  SKYSLIDLTYKLCLL 73


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 183 HSQKQNLMDEADGAAKKDSNKWDENLFGFSSK 278
           H  K +L++   G    +SN+   ++F FS +
Sbjct: 484 HHHKTDLIESDSGIEASESNRRKSDIFSFSGR 515


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 EQLKKTVTNGMKIYLDSVQKKMKFCS*KMMNCTE 321
           E ++  VTNG K  +  + +++KF      NC+E
Sbjct: 137 EIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSE 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,792
Number of Sequences: 5004
Number of extensions: 27038
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)