Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998...    28   3.7  
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    27   8.5  
01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788...    27   8.5  

>12_01_0983 -
           9979572-9980570,9980878-9981544,9982864-9983217,
           9983334-9983668
          Length = 784

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 94  CTMPRNFL--KLNSLRKNVDVTTYFCSSLISFL 2
           C +P N L  ++ S  +N DV T  CSSL  ++
Sbjct: 249 CALPENNLCSRIISTTRNADVATSCCSSLAGYI 281


>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 3   KKEINELQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYV 137
           KKE+  L+K  + +  F K+  +RK   IV N      EL  +Y+
Sbjct: 36  KKELQRLRKERIENKCFRKKEKIRKAKEIVDNALKIREELHQKYL 80


>01_01_0997 +
           7884974-7885043,7885689-7885975,7886056-7886311,
           7886455-7886537,7886634-7886687,7887941-7888012,
           7889093-7889155,7889274-7889324,7889432-7889513,
           7889606-7889701,7889774-7889944,7890024-7890130,
           7890229-7890326,7890798-7891048,7891235-7891398,
           7891689-7891979,7892067-7892377,7892477-7892655,
           7893231-7893301
          Length = 918

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  STFFLKEFNLRKFLGIVQNLQTKCYELED 128
           ST F    N+R FL  VQ L+  C+E  D
Sbjct: 88  STAFQYFENIRNFLVAVQELKLPCFEASD 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,823,118
Number of Sequences: 37544
Number of extensions: 136361
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)