Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22501| Best HMM Match : TBCC (HMM E-Value=0)                        37   0.006
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_48798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_22501| Best HMM Match : TBCC (HMM E-Value=0)
          Length = 188

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 321 RDVALRNLKNCTIGLKGLMGTLHLINLENCIXLSGP 428
           +D+ L +L+NCTI L G    + +  L NCI +SGP
Sbjct: 45  QDIGLSDLENCTIKLMGPPLAVRMDKLRNCIIISGP 80


>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 318 GTIHHFLRAKLHFLLN*IQIDFHPICYCLF*LLHQLHPLNFVFDY 184
           G + H L  KLH L+        PIC C+   LH LHPL+ +  +
Sbjct: 867 GLLEHLL--KLHMLME-------PICVCVKRHLHPLHPLHQILKF 902


>SB_48798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 32  CGNINIFP*GIQFEKISWHCAKFTN 106
           CGN N++P   QFE ++W  +   N
Sbjct: 28  CGNFNVYPYPTQFE-LAWQVSSSVN 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,001
Number of Sequences: 59808
Number of extensions: 165918
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)