Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61234-1|AAB17539.1|  346|Homo sapiens cofactor C protein.             40   0.005
BT007002-1|AAP35648.1|  346|Homo sapiens tubulin-specific chaper...    40   0.005
BC020170-1|AAH20170.1|  346|Homo sapiens tubulin folding cofacto...    40   0.005
BC017479-1|AAH17479.1|  346|Homo sapiens TBCC protein protein.         40   0.005
AL353716-1|CAI14818.1|  346|Homo sapiens tubulin folding cofacto...    40   0.005

>U61234-1|AAB17539.1|  346|Homo sapiens cofactor C protein.
          Length = 346

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
 Frame = +3

Query: 21  LQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRXXXXXXXXXXXXXHSQKQN 200
           LQK +  S FFL  ++LR+    +  LQ    E      P+              S K +
Sbjct: 94  LQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVD 153

Query: 201 LMDEADGAAK--KDS---NKWDENL-----FGFSSKXXXXXXXXXXXXYRRDVALRNLKN 350
                  A +  +DS    K + +L      GFS+             ++RDV L  L N
Sbjct: 154 AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSN 213

Query: 351 CTIGLKGLMGTLHLINLENCIXLSGP 428
           CT+ L G   TL L    +C  L GP
Sbjct: 214 CTVRLYGNPNTLRLTKAHSCKLLCGP 239


>BT007002-1|AAP35648.1|  346|Homo sapiens tubulin-specific chaperone
           c protein.
          Length = 346

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
 Frame = +3

Query: 21  LQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRXXXXXXXXXXXXXHSQKQN 200
           LQK +  S FFL  ++LR+    +  LQ    E      P+              S K +
Sbjct: 94  LQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVD 153

Query: 201 LMDEADGAAK--KDS---NKWDENL-----FGFSSKXXXXXXXXXXXXYRRDVALRNLKN 350
                  A +  +DS    K + +L      GFS+             ++RDV L  L N
Sbjct: 154 AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSN 213

Query: 351 CTIGLKGLMGTLHLINLENCIXLSGP 428
           CT+ L G   TL L    +C  L GP
Sbjct: 214 CTVRLYGNPNTLRLTKAHSCKLLCGP 239


>BC020170-1|AAH20170.1|  346|Homo sapiens tubulin folding cofactor C
           protein.
          Length = 346

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
 Frame = +3

Query: 21  LQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRXXXXXXXXXXXXXHSQKQN 200
           LQK +  S FFL  ++LR+    +  LQ    E      P+              S K +
Sbjct: 94  LQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVD 153

Query: 201 LMDEADGAAK--KDS---NKWDENL-----FGFSSKXXXXXXXXXXXXYRRDVALRNLKN 350
                  A +  +DS    K + +L      GFS+             ++RDV L  L N
Sbjct: 154 AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSN 213

Query: 351 CTIGLKGLMGTLHLINLENCIXLSGP 428
           CT+ L G   TL L    +C  L GP
Sbjct: 214 CTVRLYGNPNTLRLTKAHSCKLLCGP 239


>BC017479-1|AAH17479.1|  346|Homo sapiens TBCC protein protein.
          Length = 346

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
 Frame = +3

Query: 21  LQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRXXXXXXXXXXXXXHSQKQN 200
           LQK +  S FFL  ++LR+    +  LQ    E      P+              S K +
Sbjct: 94  LQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVD 153

Query: 201 LMDEADGAAK--KDS---NKWDENL-----FGFSSKXXXXXXXXXXXXYRRDVALRNLKN 350
                  A +  +DS    K + +L      GFS+             ++RDV L  L N
Sbjct: 154 AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSN 213

Query: 351 CTIGLKGLMGTLHLINLENCIXLSGP 428
           CT+ L G   TL L    +C  L GP
Sbjct: 214 CTVRLYGNPNTLRLTKAHSCKLLCGP 239


>AL353716-1|CAI14818.1|  346|Homo sapiens tubulin folding cofactor C
           protein.
          Length = 346

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
 Frame = +3

Query: 21  LQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRXXXXXXXXXXXXXHSQKQN 200
           LQK +  S FFL  ++LR+    +  LQ    E      P+              S K +
Sbjct: 94  LQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTRGKDAASSTKVD 153

Query: 201 LMDEADGAAK--KDS---NKWDENL-----FGFSSKXXXXXXXXXXXXYRRDVALRNLKN 350
                  A +  +DS    K + +L      GFS+             ++RDV L  L N
Sbjct: 154 AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSN 213

Query: 351 CTIGLKGLMGTLHLINLENCIXLSGP 428
           CT+ L G   TL L    +C  L GP
Sbjct: 214 CTVRLYGNPNTLRLTKAHSCKLLCGP 239


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,697,614
Number of Sequences: 237096
Number of extensions: 799183
Number of successful extensions: 1249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)