Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    27   4.3  
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    26   10.0 
AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical ...    26   10.0 
AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein...    26   10.0 

>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 348 FSNYVKPHLFGTIHHFLRAKLHFLLN*IQIDFHPICYCLF 229
           F NY    LF  + + + + ++FL   IQID H   YC F
Sbjct: 37  FGNYRFLLLFFAVFNMIYSVMNFL---IQIDIHSYRYCFF 73


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  FLALCKIYKLNVMN*KTDMFLARNLAFQRKSFQNLIVKNKI 201
           F   C IY L ++  KTD   A+    Q +SF  LI++  I
Sbjct: 229 FFTSCCIYYLVIV--KTDQVSAQTRRIQARSFYGLIIQTLI 267


>AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical
           protein Y44A6D.4 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 18  ELQKYVVTSTFFLKEFNLRKFL 83
           E++K++ T T+FL E +  KFL
Sbjct: 316 EIEKFINTKTWFLNESSRNKFL 337


>AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein
           protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 18  ELQKYVVTSTFFLKEFNLRKFL 83
           E++K++ T T+FL E +  KFL
Sbjct: 316 EIEKFINTKTWFLNESSRNKFL 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,485,203
Number of Sequences: 27780
Number of extensions: 145558
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)