Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C06f
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    26   0.21 
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   0.83 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   7.7  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 119 IRRQICSSQEIWLFKEKASKIS*SKTKFN 205
           + RQ     E+W++K KAS+   +K K N
Sbjct: 188 VLRQSVEKSELWVYKSKASEEHGNKKKKN 216


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 119 IRRQICSSQEIWLFKEKASK 178
           + RQ     E+W++K KAS+
Sbjct: 156 VLRQSVEKSELWVYKSKASE 175


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 183  HSQKQNLMDEADGAAKKDSNKWDENLFGFS 272
            H +  +   EA   + +D N++ E++FG +
Sbjct: 1092 HGEMTDKQVEAYMLSLRDENRYHEDIFGIT 1121


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 412 MQFSKLIKCNVPIKPLRPIV 353
           ++ SKLIKC    K L+ I+
Sbjct: 114 LKSSKLIKCFAKYKTLKEIM 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,448
Number of Sequences: 438
Number of extensions: 1592
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)