Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C05f
(403 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39 pro... 88 9e-18
D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39 pro... 88 9e-18
BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39 p... 88 9e-18
BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39 p... 88 9e-18
AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39 p... 88 9e-18
AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39 v... 85 6e-17
L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39 pro... 83 3e-16
BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-l... 83 3e-16
AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2... 83 3e-16
AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-l... 83 3e-16
X91257-1|CAA62635.1| 514|Homo sapiens seryl-tRNA synthetase pro... 52 1e-06
D49914-1|BAA95602.1| 514|Homo sapiens Seryl tRNA Synthetase pro... 52 1e-06
BC111398-1|AAI11399.1| 511|Homo sapiens SARS protein protein. 52 1e-06
BC009390-1|AAH09390.1| 514|Homo sapiens seryl-tRNA synthetase p... 52 1e-06
BC000716-1|AAH00716.1| 514|Homo sapiens seryl-tRNA synthetase p... 52 1e-06
AL356389-5|CAI13600.1| 536|Homo sapiens seryl-tRNA synthetase p... 52 1e-06
AL356389-4|CAI13599.1| 514|Homo sapiens seryl-tRNA synthetase p... 52 1e-06
AK222677-1|BAD96397.1| 514|Homo sapiens seryl-tRNA synthetase v... 52 1e-06
AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-l... 47 3e-05
>U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 88.2 bits (209), Expect = 9e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 5 KTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 88.2 bits (209), Expect = 9e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 5 KTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 88.2 bits (209), Expect = 9e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 5 KTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 88.2 bits (209), Expect = 9e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 5 KTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 88.2 bits (209), Expect = 9e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 5 KTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39
variant protein.
Length = 70
Score = 85.4 bits (202), Expect = 6e-17
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IK+ LAKK KQNRPIPQW+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 24 KTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70
>L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 83.0 bits (196), Expect = 3e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 5 KTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 83.0 bits (196), Expect = 3e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 5 KTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2
protein.
Length = 51
Score = 83.0 bits (196), Expect = 3e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 5 KTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 83.0 bits (196), Expect = 3e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
KTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 5 KTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>X91257-1|CAA62635.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>D49914-1|BAA95602.1| 514|Homo sapiens Seryl tRNA Synthetase
protein.
Length = 514
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>BC111398-1|AAI11399.1| 511|Homo sapiens SARS protein protein.
Length = 511
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>BC009390-1|AAH09390.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>BC000716-1|AAH00716.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>AL356389-5|CAI13600.1| 536|Homo sapiens seryl-tRNA synthetase
protein.
Length = 536
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>AL356389-4|CAI13599.1| 514|Homo sapiens seryl-tRNA synthetase
protein.
Length = 514
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>AK222677-1|BAD96397.1| 514|Homo sapiens seryl-tRNA synthetase
variant protein.
Length = 514
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +1
Query: 298 MVLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
MVLDLDLFR DK G+P IRE Q+KRFKD L D
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVD 34
>AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-like
protein.
Length = 29
Score = 46.8 bits (106), Expect = 3e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1
Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRM 119
KTF IKR LAKK KQNRPIPQW++M
Sbjct: 5 KTFTIKRFLAKKQKQNRPIPQWIQM 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,142,529
Number of Sequences: 237096
Number of extensions: 932852
Number of successful extensions: 1912
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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