Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C05f
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.2  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = -1

Query: 145 RPI--PQWVRMRTGNTIRYNAKR-----RHWRRTK 62
           RP+  P  V+ RT   IR+ + R     R+WR+ K
Sbjct: 4   RPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPK 38


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 84  LLALYRIVFPVRILTH*GMGLFCFSFLANLRLIINVF 194
           LLAL  I+F    L   G+ ++ F    +LR   N+F
Sbjct: 50  LLALLYILFTFLALLGNGLVIWIFCAAKSLRTPSNMF 86


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 375 SLLLIFSNFIWITVFI 328
           S L  FSN +WI V +
Sbjct: 559 SFLQPFSNTLWILVMV 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,283
Number of Sequences: 438
Number of extensions: 2155
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)