Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   0.63 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.8  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          24   7.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    24   7.8  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 94   RAVTSRDSSSPMQLAL*LDPECGSTVY 14
            +A+   D  +P+QL + +DPE G  V+
Sbjct: 977  KAIDYMDDGTPLQLEVKIDPETGDAVF 1003


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 174  NNSLLTTVRTHTLYLIIEMDNSRFTFKNTEDLCPDPEAYIQYIHVIKL 317
            +N LL      T+Y +  + +   T +  +DL P  E   Q  H+  +
Sbjct: 884  DNELLVECALETIYQVCALADDFMTSRIRQDLLPRLETLCQRWHLFNV 931


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -1

Query: 268 RSSVFLKVNLELSISIIKYSVCVRTVVNNELFRCAGGHIFQHXXXXXXXRTYQTFQGERA 89
           RS  F+   +E S S+   S C+R   N+ +F     H+F          +Y+T   E++
Sbjct: 208 RSKGFIYKKIEPSNSL---SSCLR---NSFVFEVPTIHVFTSTTQVHTESSYETSSSEQS 261

Query: 88  VTSRDSSS 65
             S  SSS
Sbjct: 262 DDSSSSSS 269


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 225 Q*LSTACAYVLWSIMSYFAAQVDISFNMSSGVKSAELIKHF 103
           Q ++TA   ++  +       VDISFN   G+K+  ++  F
Sbjct: 334 QVITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCLVVNGF 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,314
Number of Sequences: 5004
Number of extensions: 26517
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)