Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_4693| Best HMM Match : Ank (HMM E-Value=8.5e-27)                    27   4.2  
SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.7  

>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 85  SPRAHLEMFDKFGALHAAAHVERYVHLRSEITHY 186
           +P+  LE F+K+G L +  H+  +   ++ I HY
Sbjct: 693 APKYMLEHFEKYGYLLSREHLHAHEQTQNTIEHY 726


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 156 CPPAQRNNSLLTTVRTHT-LYLIIEMDNSRFTFKNTEDLCPDPEAYIQYIHVIKLLCKF 329
           C   Q+     TT R H  ++L+I + + R +      + P P AYI+ + V KL+  F
Sbjct: 37  CSRCQKKTCQQTTTRVHAAMHLVIRI-HWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94


>SB_4693| Best HMM Match : Ank (HMM E-Value=8.5e-27)
          Length = 231

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 289 YASGSGHRSSVFLKVNLELSISIIKYS-VCVRTVV 188
           YA+ +GHRS+V L +  + S +I  +S +C  T V
Sbjct: 55  YAAMNGHRSAVELLLKYDASTNIPDHSGICTSTAV 89


>SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 189 TTVRTHTLYLIIEMDNSRFTFKNTEDLCPDPEAYIQYIHVIKLL 320
           TT+ T+T+    +  N+ FT  NT D  P P +    +  + ++
Sbjct: 11  TTINTNTIIYTTQQLNNYFTNTNTLDPVPPPPSPFSTLTTVTII 54


>SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 265 SSVFLKV-NLELSISIIKYSVCVRTVVNNELFRCAGGH 155
           +S FL++ +  +   I+ +SVC+ +V      R  GGH
Sbjct: 10  TSAFLEIAHFMIFTQIVTFSVCISSVHVRGAIRVTGGH 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,589
Number of Sequences: 59808
Number of extensions: 200655
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)