Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    37   2e-04
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    24   1.4  
AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical prote...    22   7.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    21   9.9  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHFK 100
           +VDISFNM SGV+SA+LIK FK
Sbjct: 381 KVDISFNMESGVQSAKLIKGFK 402


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 306 HGCTEYMLQGQGTGLRYF 253
           HGC E+M +GQ    R F
Sbjct: 628 HGCDEFMFEGQNELQRTF 645


>AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical protein
           protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 222 IEMDNSRFTFKNTEDLCPDPEAYIQYIHVIKLLC 323
           I+ D    TF  T+D  P P   I  + ++ + C
Sbjct: 86  IKQDKKDITFSTTQDNFPTPHNRITIV-LLPIFC 118


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 195 LWSIMSYFAAQVDISFNMSSGVKSAELIKHFKVSAR 88
           L S+++    +VD+ +N  + VK A   KH +  A+
Sbjct: 458 LASMIASAQREVDLMYNTMAHVKDAREEKHHERCAK 493


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,307
Number of Sequences: 2352
Number of extensions: 6950
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24935070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)