Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C04f
(349 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL833922-1|CAD38778.1| 410|Homo sapiens hypothetical protein pr... 34 0.14
AK223410-1|BAD97130.1| 466|Homo sapiens PAP associated domain c... 34 0.14
AF089897-1|AAD45199.1| 379|Homo sapiens topoisomerase-related f... 34 0.14
BC126106-1|AAI26107.1| 542|Homo sapiens polymerase (DNA directe... 33 0.25
BC117137-1|AAI17138.1| 542|Homo sapiens polymerase (DNA directe... 33 0.25
BC084567-1|AAH84567.2| 542|Homo sapiens polymerase (DNA directe... 33 0.25
AY623114-1|AAT38110.1| 542|Homo sapiens polymerase (DNA directe... 33 0.25
AF089896-1|AAD45198.1| 517|Homo sapiens topoisomerase-related f... 33 0.25
AB005754-1|BAA24434.2| 542|Homo sapiens LAK-1 protein. 33 0.25
BC089405-1|AAH89405.1| 390|Homo sapiens PAPD5 protein protein. 32 0.43
BC008368-1|AAH08368.1| 706|Homo sapiens chromosome 12 open read... 29 5.3
BC003081-1|AAH03081.1| 706|Homo sapiens chromosome 12 open read... 29 5.3
AK001499-1|BAA91725.1| 706|Homo sapiens protein ( Homo sapiens ... 29 5.3
AK001492-1|BAA91721.1| 706|Homo sapiens protein ( Homo sapiens ... 29 5.3
AK001222-1|BAA91565.1| 294|Homo sapiens protein ( Homo sapiens ... 29 5.3
BC112165-1|AAI12166.1| 1444|Homo sapiens Cdc42 GTPase-activating... 28 9.3
BC112163-1|AAI12164.1| 1444|Homo sapiens Cdc42 GTPase-activating... 28 9.3
AB033030-1|BAA86518.1| 1445|Homo sapiens KIAA1204 protein protein. 28 9.3
>AL833922-1|CAD38778.1| 410|Homo sapiens hypothetical protein
protein.
Length = 410
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = -2
Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
S+ +VDISFN+ +GV++A+LIK F
Sbjct: 63 SFTEVKVDISFNVQNGVRAADLIKDF 88
>AK223410-1|BAD97130.1| 466|Homo sapiens PAP associated domain
containing protein 5 variant protein.
Length = 466
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = -2
Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
S+ +VDISFN+ +GV++A+LIK F
Sbjct: 72 SFTEVKVDISFNVQNGVRAADLIKDF 97
>AF089897-1|AAD45199.1| 379|Homo sapiens topoisomerase-related
function protein protein.
Length = 379
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = -2
Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
S+ +VDISFN+ +GV++A+LIK F
Sbjct: 19 SFTEVKVDISFNVQNGVRAADLIKDF 44
>BC126106-1|AAI26107.1| 542|Homo sapiens polymerase (DNA directed)
sigma protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120
>BC117137-1|AAI17138.1| 542|Homo sapiens polymerase (DNA directed)
sigma protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120
>BC084567-1|AAH84567.2| 542|Homo sapiens polymerase (DNA directed)
sigma protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120
>AY623114-1|AAT38110.1| 542|Homo sapiens polymerase (DNA directed)
sigma protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120
>AF089896-1|AAD45198.1| 517|Homo sapiens topoisomerase-related
function protein protein.
Length = 517
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFNM +GV++AE IK++
Sbjct: 140 KVDISFNMETGVRAAEFIKNY 160
>AB005754-1|BAA24434.2| 542|Homo sapiens LAK-1 protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120
>BC089405-1|AAH89405.1| 390|Homo sapiens PAPD5 protein protein.
Length = 390
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = -2
Query: 165 QVDISFNMSSGVKSAELIKHF 103
+VDISFN+ +GV++A+LIK F
Sbjct: 1 KVDISFNVQNGVRAADLIKDF 21
>BC008368-1|AAH08368.1| 706|Homo sapiens chromosome 12 open reading
frame 11 protein.
Length = 706
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 19 QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
Q +++GPV + W R + R H E + +++ A E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692
>BC003081-1|AAH03081.1| 706|Homo sapiens chromosome 12 open reading
frame 11 protein.
Length = 706
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 19 QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
Q +++GPV + W R + R H E + +++ A E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692
>AK001499-1|BAA91725.1| 706|Homo sapiens protein ( Homo sapiens
cDNA FLJ10637 fis, clone NT2RP2005683. ).
Length = 706
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 19 QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
Q +++GPV + W R + R H E + +++ A E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692
>AK001492-1|BAA91721.1| 706|Homo sapiens protein ( Homo sapiens
cDNA FLJ10630 fis, clone NT2RP2005622. ).
Length = 706
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 19 QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
Q +++GPV + W R + R H E + +++ A E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692
>AK001222-1|BAA91565.1| 294|Homo sapiens protein ( Homo sapiens
cDNA FLJ10360 fis, clone NT2RM2001247. ).
Length = 294
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 19 QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
Q +++GPV + W R + R H E + +++ A E Y HL+ E
Sbjct: 231 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 280
>BC112165-1|AAI12166.1| 1444|Homo sapiens Cdc42 GTPase-activating
protein protein.
Length = 1444
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 264 DLCPD--PEAYIQYIHVIKLLCKFHLNYL 344
D CPD E Y+Q IH + LCK + L
Sbjct: 74 DQCPDLTREVYLQDIHCVGSLCKLYFREL 102
>BC112163-1|AAI12164.1| 1444|Homo sapiens Cdc42 GTPase-activating
protein protein.
Length = 1444
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 264 DLCPD--PEAYIQYIHVIKLLCKFHLNYL 344
D CPD E Y+Q IH + LCK + L
Sbjct: 74 DQCPDLTREVYLQDIHCVGSLCKLYFREL 102
>AB033030-1|BAA86518.1| 1445|Homo sapiens KIAA1204 protein protein.
Length = 1445
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 264 DLCPD--PEAYIQYIHVIKLLCKFHLNYL 344
D CPD E Y+Q IH + LCK + L
Sbjct: 75 DQCPDLTREVYLQDIHCVGSLCKLYFREL 103
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,690,268
Number of Sequences: 237096
Number of extensions: 944264
Number of successful extensions: 1298
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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