Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003142-10|AAK73885.1|  338|Caenorhabditis elegans Hypothetical...    27   3.7  
AF003142-9|AAB54184.1|  348|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical pr...    27   4.9  

>AF003142-10|AAK73885.1|  338|Caenorhabditis elegans Hypothetical
           protein F57C9.1b protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 198 VLWSIMSYFAAQVDISFNMSSGVKSAEL 115
           +L+S  +YF+ ++D  F MSS    AEL
Sbjct: 10  ILFSFKTYFSKKIDSVFQMSSSELIAEL 37


>AF003142-9|AAB54184.1|  348|Caenorhabditis elegans Hypothetical
           protein F57C9.1a protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 198 VLWSIMSYFAAQVDISFNMSSGVKSAEL 115
           +L+S  +YF+ ++D  F MSS    AEL
Sbjct: 10  ILFSFKTYFSKKIDSVFQMSSSELIAEL 37


>Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical
           protein AC3.7 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 123 AELIKHFKVSAR*RHATPLVPCNLHFNW 40
           A L+KH + SA+      L P N+H+N+
Sbjct: 460 ANLLKHVEFSAKFGRVDALEPYNVHYNF 487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,175,921
Number of Sequences: 27780
Number of extensions: 151774
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)