Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   7.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 252 KNTEDLCPDPEAYIQYIHVIKLL 320
           ++TED C D  AYI  +    LL
Sbjct: 187 RDTEDKCKDTFAYIADVTGFALL 209


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 168 AQVDISFNMSSGVKSAELIKHF 103
           AQ D +  M +G+K  E + HF
Sbjct: 343 AQNDRTLQMIAGMKIKEELPHF 364


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 286 ASGSGHRSSVFLKVNLELSISIIKYSVCVRTV 191
           A G G  SSV       L+ S+I   +C+ T+
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 286 ASGSGHRSSVFLKVNLELSISIIKYSVCVRTV 191
           A G G  SSV       L+ S+I   +C+ T+
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 286 ASGSGHRSSVFLKVNLELSISIIKYSVCVRTV 191
           A G G  SSV       L+ S+I   +C+ T+
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 286 ASGSGHRSSVFLKVNLELSISIIKYSVCVRTV 191
           A G G  SSV       L+ S+I   +C+ T+
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,781
Number of Sequences: 438
Number of extensions: 1651
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)