Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C03f
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   189   1e-49
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   189   1e-49
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   1.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   1.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   1.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   2.9  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   3.8  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   5.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    24   6.7  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   6.7  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    24   6.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   8.8  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    24   8.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    24   8.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   8.8  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  189 bits (460), Expect = 1e-49
 Identities = 83/122 (68%), Positives = 104/122 (85%)
 Frame = +3

Query: 6   MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 185
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 186 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 365
           V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G
Sbjct: 61  VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119

Query: 366 DL 371
           +L
Sbjct: 120 EL 121


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  189 bits (460), Expect = 1e-49
 Identities = 83/122 (68%), Positives = 104/122 (85%)
 Frame = +3

Query: 6   MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 185
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 186 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 365
           V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G
Sbjct: 61  VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119

Query: 366 DL 371
           +L
Sbjct: 120 EL 121


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 243  NMDVPHVKREDYQLTDISDDGYL 311
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 66  PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 218
           P +CS  ++     ++   C  V       G+ H     H++G+D+ NG  Y
Sbjct: 35  PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 159 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 278
           K   A   L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 150 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 275
           K G+H  A  +++  +  N   K +D CPST   D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 193
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 261 VKREDYQLTDISDDGYL 311
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 242 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 153
           +CG T +FI    E+I+P  V     VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  ALRKNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGID 197
           AL +  + ++KGRPC+I+         K G   V +  +D
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 67  GKVAEAPESPVSKCVSSM 14
           G+  E P  P+SKC+S++
Sbjct: 189 GRYGERPSLPLSKCLSNL 206


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -3

Query: 188 NQVNFSVAVLSGFGCGHFNNLAWTTLQHN 102
           ++++FSV  L+  G G +  + W  ++++
Sbjct: 428 DEISFSVRYLASLGLGDYTKVTWFLVKNS 456


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 181 TWLGLISS--MVKSMKISVPPHTTWTY 255
           TW GL +    V+S+ +++P H +W Y
Sbjct: 263 TWFGLQAPEPRVESILMTLPLHASWRY 289


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 19  KTHTSRPETPGPQPPSPCN 75
           +T   RP + GP PP+P N
Sbjct: 101 QTLPGRPASNGPTPPNPGN 119


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 238  VEGQISSYFLPLKISIPTK*T 176
            VEG+++ Y+L L++ + T+ T
Sbjct: 1013 VEGEVTDYYLALRLLLTTRLT 1033


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 160 FPVLDVDISTILHGRPFSITKP 95
           F ++D  I  ++H RP S++KP
Sbjct: 212 FFLMDKGIRILIHERPSSLSKP 233


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 230 TDIFILFTIEDINPNQVNFSVAVLSGFGCG 141
           T  FIL TIE+ + N  +FS A  + F  G
Sbjct: 710 TPEFILSTIENASNNATDFSTAFNNYFADG 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,924
Number of Sequences: 5004
Number of extensions: 34002
Number of successful extensions: 126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)