Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C03f
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   180   2e-46
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   171   1e-43
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   0.80 
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   0.80 
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   0.80 
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   0.80 
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   0.80 
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    27   5.7  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  180 bits (439), Expect = 2e-46
 Identities = 85/119 (71%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
 Frame = +3

Query: 18  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 197
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 198 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDL 371
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +L
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTEL 124


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  171 bits (416), Expect = 1e-43
 Identities = 79/119 (66%), Positives = 99/119 (83%), Gaps = 1/119 (0%)
 Frame = +3

Query: 18  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 197
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 198 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDL 371
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDL
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDL 158


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  SKTHTSRPETPGPQPPSPCNVRPCVKTV 99
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  SKTHTSRPETPGPQPPSPCNVRPCVKTV 99
           S + T+   TPGP P +PC+  P V T+
Sbjct: 29  SASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  SKTHTSRPETPGPQPPSPCNVRPCVKTV 99
           S + T+   TPGP P +PC+  P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  SKTHTSRPETPGPQPPSPCNVRPCVKTV 99
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  TSKTHTSRPETPGPQPPSPCNVRP 84
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +3

Query: 198 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 353
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 100 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 8
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 148 PKPESTATLKFTWLGLISSMVKSMKISVPPHTTWT 252
           P P+S   +    +G +  M  S+ + VPP+T WT
Sbjct: 587 PPPQSMTPVGGP-MGPMGPMTPSIPVQVPPNTMWT 620


>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 148 PKPESTATLKFTWLGLISSMVKSMKISVPPHTTWT 252
           P P+S   +    +G +  M  S+ + VPP+T WT
Sbjct: 587 PPPQSMTPVGGP-MGPMGPMTPSIPVQVPPNTMWT 620


>U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical
           protein C06A8.5 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -1

Query: 157 PVLDVDISTILHGRPFSITKPF----LRRAEHCMGKVAEAPESPVSKCVSSMS 11
           P+L   + T+ +GRP    KP     + +  H +  +A  P+ P +K  +  S
Sbjct: 371 PLLAAPLKTLNNGRPSFFIKPKNVEPMPQLGHSLSSIAVTPQKPAAKFTTRSS 423


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 201 FNGKKYEDICPSTHNMDVPHV 263
           F  K  E +CP  HN   PHV
Sbjct: 25  FERKTIETVCPRVHNYLFPHV 45


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 27  HFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 179
           H ET DSGA A   +   A   +GF  +   P  ++   +S + + G  +V
Sbjct: 86  HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  TSKTHTSRPETPGPQPPSPCNV 78
           TS + T+ P TP P PP P  +
Sbjct: 452 TSYSSTTPPTTPKPAPPPPSRI 473


>U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical
           protein C56C10.9 protein.
          Length = 320

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = +3

Query: 237 THNMDVPHVK------REDYQLTDISDDGYLTLMADNGDLREDLK 353
           +HN+D    K      +E ++ TD++DDG+LT     G+L++ ++
Sbjct: 52  SHNLDPSDSKQLSESIKEMFKKTDVNDDGFLTA----GELKQQIR 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,298,446
Number of Sequences: 27780
Number of extensions: 207462
Number of successful extensions: 716
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)