Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C03f
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.38 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.38 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   2.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   2.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   2.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.2  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 94  FLRRAEHCMGKVAEAPESPVSKCVSSMSPIV 2
           +LRR   C   + EAP  PV + + S++P+V
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLV 75


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 94  FLRRAEHCMGKVAEAPESPVSKCVSSMSPIV 2
           +LRR   C   + EAP  PV + + S++P+V
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLV 75


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 13  TSKTHTSRPETPGPQ 57
           T   H   PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 195 DIFNGKKYEDIC 230
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 160 FPVLDVDISTILHGR 116
           FPVL V I+ +LHG+
Sbjct: 8   FPVLFVIINVLLHGQ 22


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 139 CPHPKPESTATLKFTWLGLISSMVKSM 219
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 139 CPHPKPESTATLKFTWLGLISSMVKSM 219
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 139 CPHPKPESTATLKFTWLGLISSMVKSM 219
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 216 YEDICPSTHNMDV 254
           YE   PSTH MD+
Sbjct: 46  YERFSPSTHLMDL 58


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 195 DIFNGKKYEDICPSTH 242
           +I NGKK  +I   TH
Sbjct: 44  EIINGKKLTEIINETH 59


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 37  PETPGPQPPSPCNVRP 84
           P  P P PP P +  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,594
Number of Sequences: 438
Number of extensions: 2989
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)