Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C02f
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    27   7.8  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    27   7.8  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 261  GLLGDGNNEPYDDFRLPNGKI 323
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +1

Query: 241 STWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRT-VWPAAVHRCKRPNTPITSCT 417
           S+W  F    E + T+ T       +R+ LRK ++ T T     +    ++P T  T+  
Sbjct: 132 SSWKKFTTTEEPLETTTTKRIITTPKRTTLRKTTTTTTTSTTSTSTTTTEKPTTATTTAR 191

Query: 418 MHP---SPRLRTG 447
           + P   + R+ TG
Sbjct: 192 VTPKKSTKRIGTG 204


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 366 RSCPQVQAPEHSHHQLHDASLPPPANRSSGEYRRSGPC 479
           R+C Q++ P  +   + D  LPP    +S  Y+R   C
Sbjct: 637 RNCEQMRRPHSARACVADEPLPPCMPTASALYQRDASC 674


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
            F53B6.2a protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 366  RSCPQVQAPEHSHHQLHDASLPPPANRSSGEYRRSGPC 479
            R+C Q++ P  +   + D  LPP    +S  Y+R   C
Sbjct: 971  RNCEQMRRPHSARACVADEPLPPCMPTASALYQRDASC 1008


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 393 EHSHHQLHDASLPPPANRSSGEY 461
           +H HHQ +++S P  +NR   +Y
Sbjct: 634 QHQHHQNNNSSQPSSSNRRGNDY 656


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 393 EHSHHQLHDASLPPPANRSSGEY 461
           +H HHQ +++S P  +NR   +Y
Sbjct: 742 QHQHHQNNNSSQPSSSNRRGNDY 764


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +3

Query: 303 RLPNGKICTSESEF------GNAYRLARSCPQVQAPEHSHH 407
           R P GK  TSE  +      G A +L  SC Q+  PE  HH
Sbjct: 75  RKPLGKCGTSEVNYQPCTSKGIANKLFLSCCQLYVPEECHH 115


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +1

Query: 139 LSVNQATESVLAHC-TVSWSSAHLNLRCATLKLTASTWVNFAV--FSE-TVTTSLTMTSG 306
           LS       VL H  TV  SS H  L    L L  +  + F +  FS  T++ +  M + 
Sbjct: 612 LSAKNCLLLVLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAV 671

Query: 307 YLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSC 414
             ++ +    +  +  ++WP+ V+     ++P T+C
Sbjct: 672 RTLDINQASSSLQMILSIWPSRVNSESGSDSPATTC 707


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
            protein 1, isoforma protein.
          Length = 987

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +1

Query: 139  LSVNQATESVLAHC-TVSWSSAHLNLRCATLKLTASTWVNFAV--FSE-TVTTSLTMTSG 306
            LS       VL H  TV  SS H  L    L L  +  + F +  FS  T++ +  M + 
Sbjct: 878  LSAKNCLLLVLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAV 937

Query: 307  YLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSC 414
              ++ +    +  +  ++WP+ V+     ++P T+C
Sbjct: 938  RTLDINQASSSLQMILSIWPSRVNSESGSDSPATTC 973


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +1

Query: 112 SRSSKRMCSLSVNQATESVLAHCT--VSWSSAHLNLRCATLKLTASTWVNF-AVFSETVT 282
           S SSK + S    Q + S ++  T  VS +S  +    A+L+ T ++  +    F+ T T
Sbjct: 398 SSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQASLRSTQNSVTSTPGSFTVTST 457

Query: 283 TSLTMTSGYLMERSA 327
            ++T T G +   S+
Sbjct: 458 PTITSTQGAMASSSS 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,836
Number of Sequences: 27780
Number of extensions: 281859
Number of successful extensions: 1049
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)