Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C01f
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   161   6e-41
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   0.57 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   5.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.0  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   7.0  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   9.3  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    24   9.3  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  161 bits (390), Expect = 6e-41
 Identities = 77/119 (64%), Positives = 93/119 (78%)
 Frame = -2

Query: 446 SXRYKLIGGLAVRRACYGVLRFIMEXGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 267
           S RYKL+ GLAVRRA YGVLR++ME GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P
Sbjct: 106 SLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQP 165

Query: 266 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 90
             D++++ATRHVLLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 166 AVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 389  LRFIMEXGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 234
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 324  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 235
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 326 GQRAKSMKFVDGLMIHSGDPCNDYVN 249
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 269 PCNDYVNTATRHVL 228
           PC+DYV  A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 162 RPEEATTRPHP 130
           +PEE T+RPHP
Sbjct: 404 KPEEITSRPHP 414


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 109 SSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRST 234
           SS G ++ +     +    LPCWS G  +  L  ++  L  T
Sbjct: 110 SSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMT 151


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 215 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 72
           VLG  +KI   W    K+ P+K +   I +  P+     L P+SE ++
Sbjct: 61  VLGYSIKISPVWTYNLKDVPEK-ETMSIWIVTPQRRYGILSPSSEYKA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,312
Number of Sequences: 5004
Number of extensions: 31579
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)