Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B12f
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    29   0.47 
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   1.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.3  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   3.3  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   5.8  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.8  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   5.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.6  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 190 NIPTIKTGYESFDKYEDQIISIINDLKNTYGFNN 291
           N+   K  Y +F    +  I+ +N+L  TYG++N
Sbjct: 312 NVVATKGSYNTFQGEAESAINNLNELLGTYGYSN 345


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +1

Query: 127 YDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNI---- 294
           YD D    N +  F  K+R   +P I       +   + I    N+L  T+    I    
Sbjct: 457 YDND-DYANIYTSFVVKDRATELPLILQQISEQNMVAEDISD--NELAKTHARYLIGGKS 513

Query: 295 EASKQSLF--DLPVRPGAIKHLVFAIGEPC 378
             SK+ L+  D P RPGA+   + +I E C
Sbjct: 514 SVSKERLYRLDFPERPGALCKFLRSIKEVC 543


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 175 KERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSLFDLPVRPGA 342
           +  Y  +  ++     F   E+  +    D   T GFNN+   K  +  LP RP +
Sbjct: 54  RAHYARMQQMRNQSSEFPDAENTNLRKQQDTLPTTGFNNLPEGKAGMQTLPGRPAS 109


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +1

Query: 34  SHLIDSLKSKHITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTG 213
           ++ ID    KHI D +++   + S+    +LY  D      +  F    R+N IP     
Sbjct: 155 TYAIDENGQKHIVDARMWTEAYMSEVLRSLLYSDD-----TNSRFAGHRRFNPIPNPDAE 209

Query: 214 YESFDKYE 237
              F+  E
Sbjct: 210 LRFFEAAE 217


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 175 KERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQ-SLFDLPVRPGAIKH 351
           +E YN +    +   S++K E+ I   +  + + YG  N + + Q SL  +P+   + K 
Sbjct: 125 EESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCIPLNQDSFKQ 184

Query: 352 LVFAI 366
           L   I
Sbjct: 185 LKLLI 189


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 163  HFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYG 282
            +FD +  Y+ IP+  TG  SF +  D     I     TYG
Sbjct: 962  NFDFRRPYSVIPSRMTGRSSFTQLSDDSDETIILASATYG 1001


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 46  DSLKSKHITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESF 225
           +SLK  +I + K+F + H+++Y   + Y  DL   N           + + T+   +   
Sbjct: 502 NSLKELNIANNKLFFLPHSTRYLVNLTY-LDLSYNNFVTFPLIITELSQLETLNFSHNLL 560

Query: 226 DKYEDQIISIINDLKNTY-GFNNI 294
            +   +I S++  LK+ Y  FN++
Sbjct: 561 SQISSKIGSLVK-LKHLYLQFNDL 583


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 238 PRICRRIHTQS*WWGCYCS 182
           P    R+H+QS WW  + S
Sbjct: 256 PTYSNRLHSQSHWWNMFLS 274


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 269 KIHMD-STTSKPASNRCSIF--LSDRVLS-NTWSSLLVNRVSDD 388
           K+H     T KP+    +    LSD V S NTWS+ L + V DD
Sbjct: 379 KVHRGCENTEKPSEEGKNFTTPLSDSVESENTWSNTLRSSVEDD 422


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 392 KHRPIHGSPIAKTKCLIA 339
           K+RP H   +AK +C+IA
Sbjct: 38  KNRPCHNCFVAKRECIIA 55


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 67  CVYSLDCQSNVTRAVPRYP 11
           C YS + + ++TR++P YP
Sbjct: 255 CEYSEEIEKDLTRSLPDYP 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,221
Number of Sequences: 5004
Number of extensions: 42128
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)