Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B11f
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 145 TRRIHSLDLLSTYNSPICPLLKIKKT 68
           T+R++  DLLS YN  I P++   +T
Sbjct: 34  TKRLYD-DLLSNYNRLIRPVMNNTET 58


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 365 ELIILPNCANNPCKSCKVN 309
           E++   NC  NPC     N
Sbjct: 423 EIVTCTNCGPNPCTHTTTN 441


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 365 ELIILPNCANNPCKSCKVN 309
           E++   NC  NPC     N
Sbjct: 409 EIVTCTNCGPNPCTHTTTN 427


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 365 ELIILPNCANNPCKSCKVN 309
           E++   NC  NPC     N
Sbjct: 443 EIVTCTNCGPNPCTHTTTN 461


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 365 ELIILPNCANNPCKSCKVN 309
           E++   NC  NPC     N
Sbjct: 392 EIVTCTNCGPNPCTHTTTN 410


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 356 ILPNCANNPCKSCKVNSLG 300
           +LP   NN C  C    +G
Sbjct: 56  LLPEVLNNHCNRCTSRQIG 74


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 213 SLILHQ*TVERFTSFNCIVRTCVLDESIASI 121
           +LI+ +  VE    + CIV   V  ES+ ++
Sbjct: 271 TLIIREARVEDSGKYLCIVNNSVGGESVETV 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,187
Number of Sequences: 438
Number of extensions: 2090
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)