Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B11f
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 64 4e-11
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 60 6e-10
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 59 1e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 59 1e-09
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 57 6e-09
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 53 9e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 52 2e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 51 3e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 51 3e-07
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 49 2e-06
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 48 3e-06
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 47 5e-06
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 47 5e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 46 8e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 1e-05
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 44 3e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 4e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 44 6e-05
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 41 4e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 5e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 7e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 40 0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 39 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 39 0.002
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.002
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.002
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 38 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 38 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 38 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.002
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.003
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 38 0.003
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.004
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 37 0.005
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 37 0.005
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 37 0.007
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 37 0.007
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 37 0.007
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 37 0.007
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 37 0.007
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 37 0.007
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 37 0.007
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.007
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 37 0.007
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 37 0.007
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 36 0.011
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 36 0.011
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 36 0.011
At5g24440.1 68418.m02880 RNA-binding protein, putative 36 0.015
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.015
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 35 0.020
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 35 0.020
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 35 0.020
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 35 0.020
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 35 0.020
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.027
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.027
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.027
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.027
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.035
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 34 0.035
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 34 0.035
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.035
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 34 0.035
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 34 0.046
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 34 0.046
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 34 0.046
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 34 0.046
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 34 0.046
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.061
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.061
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.061
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.061
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 33 0.081
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 33 0.081
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.081
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.11
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.11
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 33 0.11
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 32 0.14
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 32 0.14
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.19
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.19
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.19
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 32 0.19
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 0.25
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.25
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.25
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 31 0.25
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.25
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 31 0.33
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 31 0.33
At2g47310.1 68415.m05906 flowering time control protein-related ... 31 0.33
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.43
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.43
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 30 0.57
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 0.57
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 30 0.57
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 0.57
At1g30540.1 68414.m03736 ATPase, BadF/BadG/BcrA/BcrD-type family... 30 0.57
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 30 0.75
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 30 0.75
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 0.75
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 30 0.75
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 30 0.75
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 0.75
At1g26810.1 68414.m03267 galactosyltransferase family protein co... 30 0.75
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 1.00
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 29 1.00
At1g79880.3 68414.m09332 La domain-containing protein contains P... 29 1.00
At1g79880.2 68414.m09331 La domain-containing protein contains P... 29 1.00
At1g79880.1 68414.m09333 La domain-containing protein contains P... 29 1.00
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 29 1.00
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 29 1.3
At4g10610.1 68417.m01735 RNA-binding protein, putative 29 1.3
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 1.3
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 1.3
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 29 1.7
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 1.7
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 29 1.7
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 29 1.7
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 28 2.3
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 28 2.3
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 3.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 3.0
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 28 3.0
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 27 4.0
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 27 4.0
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 4.0
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 27 4.0
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 27 4.0
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2... 27 4.0
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 4.0
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 27 4.0
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 27 5.3
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 27 5.3
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 27 5.3
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 27 5.3
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 27 5.3
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 27 5.3
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 27 7.0
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 27 7.0
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 7.0
At2g33440.1 68415.m04099 splicing factor family protein similar ... 27 7.0
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 27 7.0
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 27 7.0
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 27 7.0
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 26 9.3
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 26 9.3
At3g26260.1 68416.m03276 Ulp1 protease family protein contains P... 26 9.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 26 9.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 26 9.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 26 9.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 26 9.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 26 9.3
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 64.1 bits (149), Expect = 4e-11
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA-----NRGYGFVEYTRPDDAVKARKAFN 189
+ V +PE +T ++ +F G + SCK+ +RGYGFV++ + D A A + N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 190 GLLMQNKTLKVSHALLNPELKPPTKPEADW-NLYICNLPNELTLQDLHGLFAQFGRIIN- 363
++ +K + V + + KPE + NLY+ NL +++ L FA+FG+I++
Sbjct: 174 STIVADKEIYVGKFMKKTD---RVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSL 230
Query: 364 ------SRIAAGIAFVLYEHQYEAXRA 426
+R+ G AFV +++ +A RA
Sbjct: 231 AIAKDENRLCRGYAFVNFDNPEDARRA 257
Score = 48.4 bits (110), Expect = 2e-06
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Frame = +1
Query: 4 PEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAV 168
PEE T L + + +++D++ F+ GK+ S + + RGY FV + P+DA
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
Query: 169 KARKAFNGLLMQNKTLKVSHA--------LLNPELKPPTKPE----ADWNLYICNLPNEL 312
+A + NG +K L V A LL + K + + N+Y+ N+ +
Sbjct: 256 RAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAV 315
Query: 313 TLQDLHGLFAQFGRIINSRI 372
T ++L F+Q G I ++++
Sbjct: 316 TEEELRKHFSQCGTITSTKL 335
Score = 43.2 bits (97), Expect = 8e-05
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI--ANRG----YGFVEYTRPDDAVKARKAF 186
L V + +T+ +++ F+ L S +L A+ G YG+ + DA A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 187 NGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINS 366
N L+ K ++V ++ P+ + N+++ NLP +T L +F +FG I++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPD----ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 367 RIAA-------GIAFVLYEHQYEAXRA 426
++A G FV +E + A A
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAA 168
Score = 40.3 bits (90), Expect = 5e-04
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
+ + V + +T++ + FS G + S KL+ + +G+GFV ++ P++A+ A K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 184 FNGLLMQNKTLKVSHA 231
F+G + K L V+ A
Sbjct: 364 FHGQMFHGKPLYVAIA 379
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 60.1 bits (139), Expect = 6e-10
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMGKLES---CKLIANR---GYGFVEYTRPDDAV 168
++ T L V + +T +F F+ G++ S C+ + R GYG+V Y P DA
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 169 KARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQF 348
+A N + + + ++V +++ +P L + N++I NL + + LH F+ F
Sbjct: 101 RALNELNFMALNGRAIRVMYSVRDPSL----RKSGVGNIFIKNLDKSIDHKALHETFSAF 156
Query: 349 GRIINSRIA 375
G I++ ++A
Sbjct: 157 GPILSCKVA 165
Score = 53.6 bits (123), Expect = 5e-08
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFN 189
+ + + + + + FS G + SCK+ + +GYGFV+Y + A A N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 190 GLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSR 369
G+L+ +K + V + + P + N+Y+ NL L+ ++L+ +F +FG +
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 370 I-------AAGIAFVLYEHQYEAXRA 426
I + G FV +E+ +A RA
Sbjct: 255 IMRDGEGKSKGFGFVNFENSDDAARA 280
Score = 48.4 bits (110), Expect = 2e-06
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
T + V + E ++ + + +F G SC ++ + +G+GFV + DDA +A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 184 FNGLLMQNKTLKVSHAL--------LNPELKPPTKPEAD----WNLYICNLPNELTLQDL 327
NG +K V A L + + K AD NLY+ NL +T L
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 328 HGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAXRA 426
FA FG I + S ++ G FV + EA RA
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Score = 43.2 bits (97), Expect = 8e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARKA 183
+ L V + E +T D + F+ G + SCK++ +RG GFV ++ P++A +A
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 184 FNGLLMQNKTLKVSHA 231
NG ++ K L V+ A
Sbjct: 387 MNGKMIVTKPLYVALA 402
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 59.3 bits (137), Expect = 1e-09
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 23/162 (14%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKA 174
+ T + V + E +T D + +LFS G + S ++ + RG+GFV + P++A KA
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKA 258
Query: 175 RKAFNGLLMQNKTLKVSHALLNPE----LKPP------TKPEADW-NLYICNLPNELTLQ 321
++ GL + +K L V AL E LK KP W NLY+ NL +
Sbjct: 259 MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNET 318
Query: 322 DLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAXRA 426
L +F +G+I+++++ + G FV + + E+ +A
Sbjct: 319 RLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQA 360
Score = 58.0 bits (134), Expect = 2e-09
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA----NRGYGFVEYTRPDDAVKARKAFNG 192
L V + +T + +F G + SCK++ ++G+GFV++ AV AR A +G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 193 LLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI 357
++ K L V+ + E + N+Y+ NL +T LH LF+Q+G +
Sbjct: 174 SMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Score = 35.9 bits (79), Expect = 0.011
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
+ L V + E M + + +F G++ S K++ + +G+GFV ++ +++ +A++
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 184 FNGLLMQNKTLKV 222
NG L+ K + V
Sbjct: 364 LNGFLVDGKPIVV 376
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 59.3 bits (137), Expect = 1e-09
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Frame = +1
Query: 67 MFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
+F FS+ G + SCK+ + +GYGFV++ + + A A NG+LM +K + V H
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 232 LLNPE-LKPPTKPEADW-NLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
+ E + P + N+Y+ NLP E+ +L F +FG +I+S +
Sbjct: 212 IRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG-VISSAV 259
Score = 45.6 bits (103), Expect = 1e-05
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAFNGLLMQNKTL 216
+T+ +F LF + + S ++ ++ GY ++ ++ P+DA +A +A N + ++ +
Sbjct: 60 VTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPI 119
Query: 217 KVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIA------- 375
++ L N + P T+ N++I NL + + L F+ FG I++ ++A
Sbjct: 120 RI--MLSNRD--PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRS 175
Query: 376 AGIAFVLYEHQYEAXRA 426
G FV +E + A A
Sbjct: 176 KGYGFVQFEKEESAQAA 192
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFN 189
L + + + + + + +FS G + S K++ N RG+GFV Y+ P++A++A N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 190 GLLMQNKTLKVSHA 231
G ++ K L ++ A
Sbjct: 394 GKMIGRKPLYIALA 407
Score = 41.1 bits (92), Expect = 3e-04
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
T + V +P+ + +D + F G + S ++ + R +GFV + + A A +
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 184 FNGLLMQNKTLKVSHALLNPELKPPTKPEADW------------NLYICNLPNELTLQDL 327
NG+ + + L V A E + + + + NLY+ NL + + + L
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 328 HGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAXRA 426
+F+++G + +S++ + G FV Y + EA RA
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 56.8 bits (131), Expect = 6e-09
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Frame = +1
Query: 4 PEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDA 165
PEE+ KL V +P + + LF G +E ++I NR G+GFV + ++A
Sbjct: 110 PEEA--KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 166 VKARKAFNGLLMQNKTLKVSHAL---LNPELKPPTKPEADWNLYICNLPNELTLQDLHGL 336
KA + FN + + L V+ A PE +P +A + +Y+ NLP ++ L L
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY-DAAFRIYVGNLPWDVDSGRLERL 226
Query: 337 FAQFGRIINSRIAA 378
F++ G+++++R+ +
Sbjct: 227 FSEHGKVVDARVVS 240
Score = 30.7 bits (66), Expect = 0.43
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKA 183
++ V +P + + LFS GK+ +++++R G+GFV+ + ++ A A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 184 FNGLLMQNKTLKVSHA 231
+G ++ + +KV+ A
Sbjct: 268 LDGQNLEGRAIKVNVA 283
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 52.8 bits (121), Expect = 9e-08
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 67 MFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
++ FS+ G + SCK+ + +GYGFV++ + + A A NG+L+ +K + V H
Sbjct: 148 LYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHF 207
Query: 232 LLNPELKPPTKPEAD--WNLYICNLPNELTLQDLHGLFAQFGRI 357
+ + N+Y+ NLP E+T +L F ++G I
Sbjct: 208 VRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI 251
Score = 47.6 bits (108), Expect = 4e-06
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
+ L + + + + + + +FS G + SCK++ N RG+GFV Y+ P++A+ A K
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387
Query: 184 FNGLLMQNKTLKVSHA 231
NG ++ K L V+ A
Sbjct: 388 MNGKMIGRKPLYVALA 403
Score = 46.8 bits (106), Expect = 6e-06
Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Frame = +1
Query: 67 MFSLFSTMGKLESCKLIANR--GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLN 240
+F+ + + L C+ + +R GY +V + P+DA +A ++ N ++++ +++ L N
Sbjct: 64 LFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRI--MLSN 121
Query: 241 PELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAAGI 384
+ P T+ N++I NL + + L+ F+ FG I++ ++A +
Sbjct: 122 RD--PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV 167
Score = 43.2 bits (97), Expect = 8e-05
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDA 165
G S T + V +P+ +T D + F G + S ++ + R +GFV + P+ A
Sbjct: 219 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAA 278
Query: 166 VKARKAFNGLLMQNKTLKVSHAL----LNPELKPPTKPE--------ADWNLYICNLPNE 309
A + NG+ + L V A EL+ + E NLY+ NL +
Sbjct: 279 AVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDS 338
Query: 310 LTLQDLHGLFAQFGRI------INSR-IAAGIAFVLYEHQYEAXRA 426
+ + L +F+++G + +NS+ ++ G FV Y + EA A
Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 384
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 52.0 bits (119), Expect = 2e-07
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFN 189
L V + + + + FS G + SCK+ + RGYGFV++ D A A + N
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 190 GLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSR 369
G ++ +K + V L E + N+Y+ NL T +L F Q+G I ++
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAV 255
Query: 370 I-------AAGIAFVLYEHQYEAXRA 426
+ + FV +E+ +A RA
Sbjct: 256 VMRDGDGKSRCFGFVNFENPEDAARA 281
Score = 47.6 bits (108), Expect = 4e-06
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
T + V + E T D + + F G + S ++ + R +GFV + P+DA +A +A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 184 FNGLLMQNKTLKVSHALLNP--ELKPPTKPEA----------DWNLYICNLPNELTLQDL 327
NG +K V A EL+ + E NLY+ NL + +T + L
Sbjct: 285 LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKL 344
Query: 328 HGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAXR 423
LFA+FG I + ++ + G FV + EA R
Sbjct: 345 RELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASR 383
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = +1
Query: 127 GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPN 306
GYG+V Y+ DDA KA + N + K ++++++ + + NL++ NL
Sbjct: 88 GYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSS----ARRSGVGNLFVKNLDK 143
Query: 307 ELTLQDLHGLFAQFGRIINSRIA 375
+ + LH F+ G I++ ++A
Sbjct: 144 SVDNKTLHEAFSGCGTIVSCKVA 166
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARKAFN 189
L V + + +T + + LF+ G + SCK++ ++G GFV ++ +A + N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 190 GLLMQNKTLKVSHA 231
G ++ K L V+ A
Sbjct: 390 GKMVGGKPLYVALA 403
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAV 168
E T L + ++P ++ D + +LFS+ G++ K+I +R GYGFV+Y A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 169 KARKAFNGLLMQNKTLKVSHALLN-PELKPPTKP 267
A +A NG + +TL V A + P + PP P
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPP 569
Score = 34.3 bits (75), Expect = 0.035
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 250 KPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
KPP+K + NLYI LP L L LF+ FG I+ +++
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKV 511
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.2 bits (117), Expect = 3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAV 168
E T L + ++P ++ D + +LFS+ G++ K+I +R GYGFV+Y A
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 169 KARKAFNGLLMQNKTLKVSHALLN-PELKPPTKP 267
A +A NG + +TL V A + P + PP P
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPP 569
Score = 34.3 bits (75), Expect = 0.035
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 250 KPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
KPP+K + NLYI LP L L LF+ FG I+ +++
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKV 511
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Frame = +1
Query: 4 PEESP-TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
PE S KL V + + + LF G +E ++I NR G+GFV + D+
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 163 AVKARKAFNGLLMQNKTLKVSHAL---LNPELKPPTKPEADWNLYICNLPNELTLQDLHG 333
A A + FN + + L V+ A PE + P E + +Y+ NLP ++ L
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVDNGRLEQ 262
Query: 334 LFAQFGRIINSRI 372
LF++ G+++ +R+
Sbjct: 263 LFSEHGKVVEARV 275
Score = 30.7 bits (66), Expect = 0.43
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVK 171
E ++ V +P + + LFS GK+ +++ +RG+GFV + D+ +
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 172 ARKAFNGLLMQNKTLKVSHALLNPELKPPTK 264
A A +G ++ + ++V+ A E +PP +
Sbjct: 301 AISALDGQNLEGRAIRVNVA----EERPPRR 327
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 48.0 bits (109), Expect = 3e-06
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARKAFN 189
+ V + E + + +FS GK+ SCK+ ++GYGFV++ A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 190 GLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINS 366
G L++N+ + V + + K N+Y+ NL T DL LF +FG I ++
Sbjct: 93 GTLIRNQHIHVCPFVSRGQW---DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSA 148
Score = 43.2 bits (97), Expect = 8e-05
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 25/161 (15%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
T + V + E T + LF G++ S ++ + R +GFV + + + AV A +
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 184 FNGLLMQNKTLKVSHALLNP----ELKPP---------TKPEADWNLYICNLPNELTLQD 324
NG+++ K L V A +LK K NLY+ NL + +
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 325 LHGLFAQFGRIINSR-------IAAGIAFVLYEHQYEAXRA 426
L LF++FG I + + I+ G+ FV + EA +A
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKA 279
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFN 189
L V + + + + LFS G + SCK++ + +G GFVE++ ++A KA N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 190 GLLMQNKTLKVSHA 231
G ++ NK + VS A
Sbjct: 285 GKMVGNKPIYVSLA 298
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 47.2 bits (107), Expect = 5e-06
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMG-----KLESCKLIANRGYGFVEYTRPDDAVK 171
E S T+LI +P T + + SLF G ++ K NRG F+E P++A
Sbjct: 90 EISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAAT 149
Query: 172 ARKAFNGLLMQNKTLKVSHALLNPEL----KPPTKPEADWNLYICNLPNELTLQDLHGLF 339
A K+ + + LKV +A + + P +NL++ NL E + L F
Sbjct: 150 ALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFF 209
Query: 340 -AQFGRII--------NSRIAAGIAFVLYEHQYEAXRA 426
A G ++ N R ++G FV ++ + +A A
Sbjct: 210 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAA 247
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 253 PPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAA-----GIAFVLYEHQYEA 417
P PE LYICNLP +T +D + LF ++ I RI G AFV+YE Y+A
Sbjct: 12 PRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDA 71
Query: 418 XRA 426
+A
Sbjct: 72 KKA 74
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 46.4 bits (105), Expect = 8e-06
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKA 183
KL+V IP + D + S G LE C ++ +RG+G+V + +DA A K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 184 FNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI-- 357
+ + N+ L+V A E++ P K +++ +P+ ++ D F ++G I
Sbjct: 64 EH--FLGNRILEVKVATPKEEMRQPAKKVT--RIFVARIPSSVSESDFRSHFERYGEITD 119
Query: 358 ------INSRIAAGIAFVLY 399
NS+ GI F+ +
Sbjct: 120 LYMPKDYNSKQHRGIGFITF 139
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 256 PTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
PT +++ LP E ++ DL F +FG I ++ I
Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 271
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 1e-05
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
T + V + E T D + + F GK+ S ++ + +G+GFV + DDA +A ++
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 184 FNGLLMQNKTLKVSHALLNPE------------LKPPTKPEADWNLYICNLPNELTLQDL 327
NG +K V A E LK NLY+ NL ++ + L
Sbjct: 89 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 148
Query: 328 HGLFAQFGRIINSRI 372
+F+ FG + +S++
Sbjct: 149 KEIFSPFGTVTSSKV 163
Score = 31.9 bits (69), Expect = 0.19
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +1
Query: 193 LLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
+L+ +K + V L E N+Y+ NL T DL F ++G+I ++ +
Sbjct: 1 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60
Query: 373 -------AAGIAFVLYEHQYEAXRA 426
+ G FV +E+ +A RA
Sbjct: 61 MKDGEGKSKGFGFVNFENADDAARA 85
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 76 LFSTMGKLESCKLIA-NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELK 252
LF G + + NRG+ V Y A KA +A +G L++ + L + +++ P+ +
Sbjct: 230 LFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSI--PK-E 286
Query: 253 PPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI 357
P + ++ L++ NL + ++ ++LHG+F+ +G I
Sbjct: 287 NPKENSSEGALWVNNLDSSISNEELHGIFSSYGEI 321
Score = 29.5 bits (63), Expect = 1.00
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMGKLE--------SCKLIANRGYGFVEYTRPDD 162
E+S T L++ IP T M+ + K K N GY F+ P++
Sbjct: 738 EDSRTTLMIKNIPNKYTSKMLLAAIDEYCKGTYDFLYLPIDFKNKCNVGYAFINLIEPEN 797
Query: 163 AVKARKAFNG 192
V KAFNG
Sbjct: 798 IVPFYKAFNG 807
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKL------IANRGYGFVEYTRPDDAVK 171
+SP K+ V + + +T++M+ +LFS GK+ S K+ + G+GFV ++ +D
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 172 ARKAFNGLLMQNKTLKVSHA 231
A A N L++ + ++V+ A
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/137 (18%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVK 171
E+ ++ + IP +T + + L G +E +++ +R +GF +DA
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 172 ARKAFNGLLMQNKTLKVS----HALLNPEL-----KPPTKPEADWNLYICNLPNELTLQD 324
+ NG ++ + +KV+ +P+L + ++ + +Y+ NL +T +
Sbjct: 133 VVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEM 192
Query: 325 LHGLFAQFGRIINSRIA 375
L LF++ G++++++++
Sbjct: 193 LENLFSEKGKVVSAKVS 209
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 44.0 bits (99), Expect = 4e-05
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIA--NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVS 225
+T+ ++ +F++ G +ESCKLI YGFV Y A A NG + + +KV+
Sbjct: 74 VTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVN 133
Query: 226 HALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI--------AAG 381
A + + + + +N+++ +L E+T L F+ F ++R+ + G
Sbjct: 134 WAYATGQREDTS---SHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRG 190
Query: 382 IAFVLYEHQYEAXRA 426
FV + +Q +A A
Sbjct: 191 FGFVSFRNQQDAQTA 205
Score = 34.7 bits (76), Expect = 0.027
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 4 PEESP---TKLIVNYIPEVMTQDMMFSLFSTMGK--LESCKLIANRGYGFVEYTRPDDAV 168
PE +P T + N PEV TQ + LF T+G +E ++ ++G+GFV Y D+A
Sbjct: 262 PENNPQFTTVYVGNLSPEV-TQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAA 320
Query: 169 KA 174
A
Sbjct: 321 LA 322
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +1
Query: 43 PEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKAFNGLLMQ 204
PEV T +F FS +++ +RG+GFV + DA A NG +
Sbjct: 157 PEV-TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVS 215
Query: 205 NKTLKVSHA 231
++ ++ + A
Sbjct: 216 SRQIRCNWA 224
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 43.6 bits (98), Expect = 6e-05
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Frame = +1
Query: 31 VNYIPEVMTQDMMFSLFSTMGKLESCKLIAN--RGYGFVEYTRPDDAVKARKAFNGLLMQ 204
V I +T+ ++ +F++ G +ES KLI YGFV Y A A + NG +
Sbjct: 63 VGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLF 122
Query: 205 NKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI---- 372
+ +KV+ A + + + + +N+++ +L E+T L+ F+ F ++R+
Sbjct: 123 GQPIKVNWAYATGQREDTS---SHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQ 179
Query: 373 ----AAGIAFVLYEHQYEAXRA 426
+ G FV + +Q +A A
Sbjct: 180 KTGRSRGFGFVSFRNQQDAQTA 201
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 43 PEVM--TQDMMFSLFSTMGKLESC---KLIANRGYGFVEYTRPDDAVKARKAFNGLLMQN 207
PEV T FS+FS+ K +RG+GFV + DA A NG + +
Sbjct: 153 PEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSS 212
Query: 208 KTLKVSHA 231
+ ++ + A
Sbjct: 213 RQIRCNWA 220
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +1
Query: 265 PEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAA-----GIAFVLYEHQYEAXRA 426
PE + LY+ NLP +T ++++ +F ++G I RI G AFV+YE Y+A A
Sbjct: 15 PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNA 73
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 41.5 bits (93), Expect = 2e-04
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR--GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVS 225
+T+ ++ +F+ G +ESCKLI YGFV Y A A + NG + + +KV+
Sbjct: 65 VTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVN 124
Query: 226 HALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI--------AAG 381
A + + + + + +N+++ +L E+T L F+ + ++R+ + G
Sbjct: 125 WAYASGQREDTS---SHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRG 181
Query: 382 IAFVLYEHQYEAXRA 426
FV + +Q +A A
Sbjct: 182 FGFVSFRNQQDAQTA 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +1
Query: 43 PEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKAFNGLLMQ 204
PEV T M+F+ FS +++ +RG+GFV + DA A G +
Sbjct: 148 PEV-TDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLG 206
Query: 205 NKTLKVSHA 231
++ ++ + A
Sbjct: 207 SRQIRCNWA 215
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNL 300
+RG+ FV + +D +G + LKV+ A K P PE + L++ NL
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNL 184
Query: 301 PNELTLQDLHGLFAQFGRIINSRI 372
+T + L G F + G ++ +R+
Sbjct: 185 SWTVTSESLAGAFRECGDVVGARV 208
Score = 30.7 bits (66), Expect = 0.43
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVK 171
E+ KL V + +T + + F G + +++ +RGYGFV Y+ +
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 172 ARKAFNGLLMQNKTLKVSHA 231
A ++ +G ++ + ++V+ A
Sbjct: 234 ALESLDGFELEGRAIRVNLA 253
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 40.3 bits (90), Expect = 5e-04
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
T + V + +T + + FS G++ S K+ +G GFV++ +A +A + NG +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTV 365
Query: 199 MQNKTLKVSHALLNPELKPP 258
+ +T+++S NP K P
Sbjct: 366 IGKQTVRLSWG-RNPANKQP 384
Score = 33.9 bits (74), Expect = 0.046
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPE--------LKPP---TKP 267
++GYGFV + ++ KA NG+ ++ +++ A P T+
Sbjct: 240 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRS 299
Query: 268 EAD---WNLYICNLPNELTLQDLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAXRA 426
E D +++ L + +T +DL F++FG I++ +I G FV + ++ A A
Sbjct: 300 EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEA 357
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 118 ANRGYGFVEYTRPDDAVKARKAFNGLLMQN--KTLKVSHALLNPELKPPTKPEADWNLYI 291
++ GYGFVE+ D A K + FNG M N + +++ A + K D ++++
Sbjct: 144 SSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFV 203
Query: 292 CNLPNELTLQDLHGLFAQ 345
+L +++ LH F++
Sbjct: 204 GDLAPDVSDALLHETFSE 221
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.9 bits (89), Expect = 7e-04
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
G E P ++ V +P T+ + L + G L L+ +R GY F Y P
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPE 270
A A NG+ M +KTL V A+ P + E
Sbjct: 429 TDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEE 464
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIA--NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVS 225
+T+ ++ +F++ G +ESCKLI YGFV Y A A NG + + +KV+
Sbjct: 74 VTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVN 133
Query: 226 HALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQF 348
A + + + + +N+++ +L E+T L F+ F
Sbjct: 134 WAYATGQREDTS---SHFNIFVGDLSPEVTDAALFDSFSAF 171
Score = 34.7 bits (76), Expect = 0.027
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 4 PEESP---TKLIVNYIPEVMTQDMMFSLFSTMGK--LESCKLIANRGYGFVEYTRPDDAV 168
PE +P T + N PEV TQ + LF T+G +E ++ ++G+GFV Y D+A
Sbjct: 266 PENNPQFTTVYVGNLSPEV-TQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAA 324
Query: 169 KA 174
A
Sbjct: 325 LA 326
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
+RG+GFV + DA A NG + ++ ++ + A
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/80 (26%), Positives = 42/80 (52%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
T + V + +T + + F+ G++ S K+ +G GFV++ +A +A + NG +
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTV 363
Query: 199 MQNKTLKVSHALLNPELKPP 258
+ +T+++S NP K P
Sbjct: 364 IGKQTVRLSWG-RNPANKQP 382
Score = 35.5 bits (78), Expect = 0.015
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPE--------LKPP---TKP 267
++GYGFV + ++ KA NG+ ++ +++ A P T+P
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRP 297
Query: 268 EAD---WNLYICNLPNELTLQDLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAXRA 426
E D +++ L + +T +DL F +FG I++ +I G FV + ++ A A
Sbjct: 298 EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEA 355
Score = 33.9 bits (74), Expect = 0.046
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQN--KTLKVSHALLNPELKPPTKPEADWNLYIC 294
+ GYGFVE+ D A K + FNG M N + +++ A + K D ++++
Sbjct: 143 SEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVG 202
Query: 295 NLPNELTLQDLHGLFAQ 345
+L +++ LH F++
Sbjct: 203 DLSPDVSDNLLHETFSE 219
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.7 bits (86), Expect = 0.002
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTM-GKLESCKLIANR------GYGFVEYTRPD 159
GPE T + + P+V T M+ F + ++ K++ +R GYGFV +
Sbjct: 170 GPEH--TVFVGDLAPDV-TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226
Query: 160 DAVKARKAFNGLLMQNKTLKVSHALLNPEL--KPPTKPEADWN----------LYICNLP 303
+ ++A NG ++ ++ A L +P + N +++ +
Sbjct: 227 EQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVD 286
Query: 304 NELTLQDLHGLFAQFGRIINSRIAAG--IAFVLYEHQYEAXRA 426
+T DL +F QFG +++ +I AG FV Y ++ A +A
Sbjct: 287 QSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQA 329
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
T + V + + +T+D + S+F G+L K+ A + GFV+Y A +A NG
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQ 337
Query: 199 MQNKTLKVS 225
+ +++++S
Sbjct: 338 LGGQSIRLS 346
Score = 29.9 bits (64), Expect = 0.75
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLM 201
M ++ + ++F G+ + K+I N+ GYGF+E+ A + + +NG M
Sbjct: 91 MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPM 146
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 38.3 bits (85), Expect = 0.002
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTM-GKLESCKLIANR------GYGFVEYTRPD 159
GP+ T + + PEV T M+ F + G ++ K++ +R GYGFV + +
Sbjct: 151 GPDH--TIFVGDLAPEV-TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 160 DAVKARKAFNGLLMQNKTLKVSHAL------LNPELKPPTK----PEADWN---LYICNL 300
+ ++A NG + +++ A + P + T+ + D N +++ L
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGL 267
Query: 301 PNELTLQDLHGLFAQFGRIINSRIAAG--IAFVLYEHQYEAXRA 426
+T +L +F QFG +++ +I G FV Y ++ A A
Sbjct: 268 DANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHA 311
Score = 36.3 bits (80), Expect = 0.009
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
G L + + + M ++ + S+F+ G+ S K+I N+ GYGF+E+
Sbjct: 54 GSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 163 AVKARKAFNGLLMQN--KTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGL 336
A + + +NG M + +T +++ A K D +++ +L E+T L
Sbjct: 114 AERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDT 173
Query: 337 FAQ-FGRIINSRI--------AAGIAFVLYEHQYEAXRA 426
F +G + +++ + G FV + + E RA
Sbjct: 174 FKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Score = 34.7 bits (76), Expect = 0.027
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
T + V + +T D + S+F G+L K+ + GFV+Y A A NG
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Query: 199 MQNKTLKVS 225
+ +++++S
Sbjct: 320 LGGQSIRLS 328
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +1
Query: 13 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA 174
S + L V + +++ + +FS G++ + K+IAN GYG+V + +DA A
Sbjct: 75 SISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSA 134
Query: 175 RKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADW 279
+A NG + + V P L +P +D+
Sbjct: 135 VEAMNGKFFDGRFILVKFG--QPGLSRRRRPHSDF 167
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
+KL + + T+ + FS G++ +++ +R G+GFV + D+A KA
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 181 AFNGLLMQNKTLKVSHA 231
FNG + +T+ V +A
Sbjct: 94 EFNGQQLNGRTIFVDYA 110
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKARKA 183
+L V+ + T + LFS G+++ +LI + +G+GF+ + DDA KA K+
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 184 FNGLLMQNKTLKVSHA 231
+G ++ + + V A
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRII--------NSRIAAGIAFVLYEHQYEAXRA 426
LY+ NL LT D+H LF+ FG++ ++R + G+AFVLY + +A +A
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114
Score = 36.7 bits (81), Expect = 0.007
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
G S + L V+ + +T + +LFST GK+ ++ +R G FV Y +D
Sbjct: 51 GLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRED 110
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLN 240
A KA ++ + ++ + L VS A N
Sbjct: 111 AAKAARSMDAKILNGRKLTVSIAADN 136
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.015
Identities = 16/69 (23%), Positives = 39/69 (56%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
T + V + + +T++ + FS +G++ K+ A +GYG+V++ A +A + G +
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 199 MQNKTLKVS 225
+ + +++S
Sbjct: 297 IGQQAVRIS 305
Score = 33.1 bits (72), Expect = 0.081
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Frame = +1
Query: 58 QDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNK--T 213
++ + S FS G+L S K+I N+ GYGF+E+ A + + +NG M T
Sbjct: 37 ENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELT 96
Query: 214 LKVSHALLNPELKPPTKPEADWNLYICNLPNELT 315
+++ A K P D ++++ +L ++T
Sbjct: 97 FRLNWASFGSGQKVDAGP--DHSIFVGDLAPDVT 128
Score = 29.9 bits (64), Expect(2) = 0.002
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
++GYGFV++ + +A NGL + +++S A
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
Score = 27.5 bits (58), Expect(2) = 0.002
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 253 PPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAA--GIAFVLYEHQYEAXRA 426
PP + + NL +T ++L F+Q G +I +I A G +V ++ + A A
Sbjct: 229 PPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEA 288
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 4 PEESPTK-LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARK 180
P P K L V I +++D + FS GK+E + + R F++Y DDA++A K
Sbjct: 244 PYAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-K 302
Query: 181 AFNGLLMQNKTLKV 222
+ NG M L+V
Sbjct: 303 SMNGKPMGGSFLRV 316
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 37.9 bits (84), Expect = 0.003
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Frame = +1
Query: 79 FSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNP 243
F+ + ++ S +L+ N GYGFVE+ A KA + NG + N + + +P
Sbjct: 178 FNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHESP 237
Query: 244 ELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVLYE 402
+ L++ NL + + + D+ F G +++ R+ AG FV +
Sbjct: 238 GF--AEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFA 295
Query: 403 HQYEAXRA 426
EA +A
Sbjct: 296 SANEAEKA 303
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 28 IVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAFNG 192
+ N P+ D+ F F+ +G++ S +L+ N GYGFVE+ D+ KA + NG
Sbjct: 248 VANLSPQTKISDI-FDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNG 306
Query: 193 LLMQNKTLKVSHALLNP 243
+ + + + A P
Sbjct: 307 EYLHDHKIFIDVAKTAP 323
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKA 183
T + N P ++ F + ++ +LI N G GFVE+ ++A KA +
Sbjct: 490 TLFVANLSPRTKISHII-KFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQK 548
Query: 184 FNGLLMQNKTLKVSHALLNP-ELKP 255
NG ++++ + + L P L+P
Sbjct: 549 MNGENLRSREIFLDVVELAPYPLRP 573
Score = 26.6 bits (56), Expect = 7.0
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAFN 189
L V +P + F +G++ +LI N G GFVE+ ++A +A + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 190 GLLMQNKTLKVSHALLNPELKPP 258
G + N + + A PP
Sbjct: 189 GECLDNNKIFLDVANKKATYLPP 211
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 37.1 bits (82), Expect = 0.005
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Frame = +1
Query: 127 GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV---SHALLNPELKPPTKPEADWNLYICN 297
GYGFVE+ + A + G ++ L + + + K K + L++ N
Sbjct: 616 GYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKN 675
Query: 298 LPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAXRA 426
+ E T ++L LF+ FG+I + R+ AG AFV + + EA A
Sbjct: 676 IAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
Score = 33.1 bits (72), Expect = 0.081
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKA 183
+L V +P T++ + FST GK+ L+ +RG ++ Y P+ A +A +
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 321
Query: 184 FNGLLMQNKTLKV 222
+ Q + L +
Sbjct: 322 LDNSSFQGRLLHI 334
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKA 183
TKL V I T+ + LFS G+++S +L GY FVE+ +A+ A+KA
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARK 180
G + T + P+V+ +D+ FS G++ S K+ +G GFV++ A A +
Sbjct: 316 GESTNATIFVGGIDPDVIDEDLR-QPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIE 374
Query: 181 AFNGLLMQNKTLKVS 225
+ NG ++ T+++S
Sbjct: 375 SLNGTVIGKNTVRLS 389
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQN-- 207
M + + S FS G++ S K+I N+ GYGFVE+ A + + ++G +M N
Sbjct: 119 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSD 178
Query: 208 KTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFA 342
+ +++ A + K + D ++++ +L ++T LH F+
Sbjct: 179 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFS 223
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
++GYGFV + ++ +A NG N+ ++V A
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 LYICNLPNELT-LQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
L++ N + T +DL F +G+I+N RI AF+ YE Q +A RA
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 146
Score = 34.3 bits (75), Expect = 0.035
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPE-VMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKAR 177
G S T ++N+ + T+D+ F GK+ + ++ R + F++Y +DA +A
Sbjct: 91 GLRPSKTLFVINFDAQNTRTRDLERH-FEPYGKIVNVRI--RRNFAFIQYEAQEDATRAL 147
Query: 178 KAFNGLLMQNKTLKVSHAL 234
A N + +K + V +A+
Sbjct: 148 DATNSSKLMDKVISVEYAV 166
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 LYICNLPNELT-LQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
L++ N + T +DL F +G+I+N RI AF+ YE Q +A RA
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 146
Score = 34.3 bits (75), Expect = 0.035
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPE-VMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKAR 177
G S T ++N+ + T+D+ F GK+ + ++ R + F++Y +DA +A
Sbjct: 91 GLRPSKTLFVINFDAQNTRTRDLERH-FEPYGKIVNVRI--RRNFAFIQYEAQEDATRAL 147
Query: 178 KAFNGLLMQNKTLKVSHAL 234
A N + +K + V +A+
Sbjct: 148 DATNSSKLMDKVISVEYAV 166
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
G E P ++ V +P T+ + L + G L+ L+ +R GY F Y
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLNPELKPP 258
A A NG+ M +KTL V A L+ P
Sbjct: 413 TDIACAALNGIKMGDKTLTVRRANQGTMLQKP 444
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
G E P ++ V +P T+ + L + G L+ L+ +R GY F Y
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLNPELKPP 258
A A NG+ M +KTL V A L+ P
Sbjct: 413 TDIACAALNGIKMGDKTLTVRRANQGTMLQKP 444
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
G E P ++ V +P T+ + L + G L+ L+ +R GY F Y
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLNPELKPP 258
A A NG+ M +KTL V A L+ P
Sbjct: 413 TDIACAALNGIKMGDKTLTVRRANQGTMLQKP 444
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 LYICNLPNELT-LQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
L++ N + T +DL F +G+I+N RI AF+ YE Q +A RA
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 106
Score = 34.3 bits (75), Expect = 0.035
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 13 SPTKLIVNYIPE-VMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFN 189
S T ++N+ + T+D+ F GK+ + ++ R + F++Y +DA +A A N
Sbjct: 55 SKTLFVINFDADNTRTRDLE-KHFEPYGKIVNVRI--RRNFAFIQYEAQEDATRALDASN 111
Query: 190 GLLMQNKTLKVSHALLNPELK 252
+ +K + V +A+ + + +
Sbjct: 112 NSKLMDKVISVEYAVKDDDAR 132
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 LYICNLPNELT-LQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
L++ N + T +DL F +G+I+N RI AF+ YE Q +A RA
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 147
Score = 34.3 bits (75), Expect = 0.035
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 13 SPTKLIVNYIPE-VMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFN 189
S T ++N+ + T+D+ F GK+ + ++ R + F++Y +DA +A A N
Sbjct: 96 SKTLFVINFDADNTRTRDLE-KHFEPYGKIVNVRI--RRNFAFIQYEAQEDATRALDASN 152
Query: 190 GLLMQNKTLKVSHALLNPELK 252
+ +K + V +A+ + + +
Sbjct: 153 NSKLMDKVISVEYAVKDDDAR 173
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 36.7 bits (81), Expect = 0.007
Identities = 23/82 (28%), Positives = 43/82 (52%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNL 300
++ YGF+EY +DA A K N + + K ++V+ A + + + NL+I NL
Sbjct: 65 HQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKK-----SLDVGANLFIGNL 119
Query: 301 PNELTLQDLHGLFAQFGRIINS 366
++ + L+ F+ FG I ++
Sbjct: 120 DPDVDEKLLYDTFSAFGVIASN 141
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +1
Query: 28 IVNYIPEVMTQDMMFSLFSTMGKLESCKLIA-------NRGYGFVEYTRPDDAVKARKAF 186
I N P+V + +++ FS G + S I +RG+GF+ Y + + A ++
Sbjct: 116 IGNLDPDV-DEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESM 174
Query: 187 NGLLMQNKTLKVSHA 231
G + N+ + VS+A
Sbjct: 175 TGQYLSNRQITVSYA 189
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 36.7 bits (81), Expect = 0.007
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAF 186
E + + + V + +T++ + FS G++ S K+ +G GFV++ A +A
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNL 382
Query: 187 NGLLMQNKTLKVS 225
NG ++ T+++S
Sbjct: 383 NGTVIGKNTVRLS 395
Score = 34.3 bits (75), Expect = 0.035
Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQN-- 207
M + + + FS ++ S K+I N+ GYGFVE+ A +A ++F+G+ M N
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAE 189
Query: 208 KTLKVSHALLNPELKPPTKPEADWNLYICNLPNELT 315
+ +++ A + K ++ D ++++ +L +++
Sbjct: 190 QPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVS 225
Score = 26.2 bits (55), Expect(2) = 0.072
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAXRA 426
+++ L ++T +DL F+ FG +++ +I G FV + ++ A A
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEA 378
Score = 25.8 bits (54), Expect(2) = 0.072
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
++GYGFV + ++ +A NG ++ ++V A
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 36.7 bits (81), Expect = 0.007
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
T + V + +T D + ++FS G++ K+ A + GFV+++ A +A + NG+
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Query: 199 MQNKTLKVS 225
+ T+++S
Sbjct: 321 LGGTTVRLS 329
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGL---LMQ 204
M ++ ++ F+ G++ S K+I N+ GYGF+E+ A + + FN
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 205 NKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELT 315
++ +++ A L+ K P D+ +++ +L ++T
Sbjct: 133 DQLFRLNWASLSSGDKRDDSP--DYTIFVGDLAADVT 167
Score = 29.5 bits (63), Expect = 1.00
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Frame = +1
Query: 124 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPEL----------KPPTKPEA 273
+GYGFV ++ + ++A NG+ + +++ A + +
Sbjct: 197 KGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDN 256
Query: 274 DWN---LYICNLPNELTLQDLHGLFAQFGRIINSRIAAG 381
D N +++ L +T L +F+Q+G I++ +I AG
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG 295
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +1
Query: 13 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA 174
S +KL + + M +D + F+ G++ ++I +R G+GFV +T + A A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 175 RKAFNGLLMQNKTLKVSHA 231
+A +G + + +KV++A
Sbjct: 98 IQALDGRDLHGRVVKVNYA 116
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKA-- 174
+K++V +P ++D + FS G++ KLI + +GY F+++T DDA A
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 175 ---RKAFNGLLM 201
R+ +NG ++
Sbjct: 100 TMDRRMYNGRMI 111
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.9 bits (79), Expect = 0.011
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARK 180
+KL + + + + + FS+ G++ ++ +RG+GFV++ DA+ A+
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 181 AFNGLLMQNKTLKVSHAL 234
A +G + + L++S AL
Sbjct: 101 AMDGKGLLGRPLRISFAL 118
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 35.5 bits (78), Expect = 0.015
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Frame = +1
Query: 31 VNYIPEVMTQDMMFSLFSTMGKLESCKLIAN----RGYGFVEYTRPDDAVKA-RKA---F 186
V+ I +T++ + SLF + G++ C++ + + F+E+T + A A RK+ F
Sbjct: 141 VSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRKSGTMF 200
Query: 187 NGLLMQNKTLKVSHALLNPELKPPTKPEAD---WNLYICNLPNELTLQDLHGLF 339
++ K + A +NP P +K E + +Y N+ E+T +L F
Sbjct: 201 GSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDKEVTKMELENFF 254
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.5 bits (78), Expect = 0.015
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +1
Query: 28 IVNYIPEVMTQDMMFSLFSTMGKLESC------KLIANRGYGFVEYTRPDDAVKARKAFN 189
+ N + D+M LF G + C K +RG+GFV + +DA +A N
Sbjct: 178 VTNLSEDTRGPDLM-ELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLN 236
Query: 190 GLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPN 306
G N L+V + +L P + AD+N +C L N
Sbjct: 237 GYGYDNLILRVEWSTPKTQLDPFS--FADYN-NLCKLLN 272
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 35.1 bits (77), Expect = 0.020
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKA 183
+L V+ + + T + + F++ G+L ++I +R G+GFV Y +DA KA+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 184 FNGLLMQNKTLKVSHALLNPELKP----PTKPEAD 276
N + + V A +P P +P ++
Sbjct: 95 MNAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSE 129
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.1 bits (77), Expect = 0.020
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +1
Query: 73 SLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL 234
SLFS GK+ ++I +R G+GFV Y + A K+ +G + + ++VS A
Sbjct: 222 SLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA- 280
Query: 235 LNPELKPPTK 264
E +PP +
Sbjct: 281 ---EARPPRR 287
Score = 33.5 bits (73), Expect = 0.061
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKA 183
KL V +P + + LF + G +E ++I +RG+GFV + + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 184 FNGLLMQNKTLKVS 225
FNG + + L+V+
Sbjct: 152 FNGYELDGRPLRVN 165
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 35.1 bits (77), Expect = 0.020
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +1
Query: 16 PTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKAR 177
PT L+V + Q+ + F G ++ L + RG+GFV++ P DA A+
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK 94
Query: 178 KAFNGLLMQNKTLKVSHALLNPELKPPTKPEA 273
+G L+ + L V A N K PT+ A
Sbjct: 95 HHMDGYLLLGRELTVVFAEEN--RKKPTEMRA 124
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 35.1 bits (77), Expect = 0.020
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Frame = +1
Query: 10 ESPTK-LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA-NRGYGFVEYTRPDDAVKARKA 183
E P++ L V I + + +LF G + + +RG+ + Y A A ++
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRS 223
Query: 184 FNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI 357
++ + L + ++ P+ P K L + NL ++ DLHG+F G I
Sbjct: 224 LQNKPLRRRKLDIHFSI--PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEI 279
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 35.1 bits (77), Expect = 0.020
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Frame = +1
Query: 10 ESPTK-LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA-NRGYGFVEYTRPDDAVKARKA 183
E P++ L V I + + +LF G + + +RG+ + Y A A ++
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRS 223
Query: 184 FNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRI 357
++ + L + ++ P+ P K L + NL ++ DLHG+F G I
Sbjct: 224 LQNKPLRRRKLDIHFSI--PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEI 279
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.027
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 124 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPT 261
+G+GF+ + DDA KA KA NG ++ + + V A E++ PT
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA---KEVEAPT 149
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.027
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +1
Query: 13 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA 174
S + L V + +++ + +FS G++ + K+IAN GYG+V + +DA A
Sbjct: 56 SISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSA 115
Query: 175 RKAFNG 192
+A NG
Sbjct: 116 VEAMNG 121
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.027
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +1
Query: 259 TKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI----AAGIA----FVLYEHQYE 414
T+ A NL+I N+P E Q+L F FG+++++++ A GI+ F+ Y+ Q
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 415 AXRA 426
A A
Sbjct: 393 AQNA 396
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRG------YGFVEYTRPDDAVKARKAF 186
L + IP + + F GK+ S K+ ++ +GF+ Y A A
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 187 NGLLMQNKTLKV 222
NG + K LKV
Sbjct: 401 NGCQLSGKKLKV 412
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.027
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +1
Query: 259 TKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI----AAGIA----FVLYEHQYE 414
T+ A NL+I N+P E Q+L F FG+++++++ A GI+ F+ Y+ Q
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 415 AXRA 426
A A
Sbjct: 384 AQNA 387
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRG------YGFVEYTRPDDAVKARKAF 186
L + IP + + F GK+ S K+ ++ +GF+ Y A A
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 187 NGLLMQNKTLKV 222
NG + K LKV
Sbjct: 392 NGCQLSGKKLKV 403
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.3 bits (75), Expect = 0.035
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 183
T L + + ++++M+F +FS GK+ L + RG+ F+E+ D A +A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 184 FNGLLMQNKTLKV 222
+G L+ K L V
Sbjct: 77 MDGRLIGQKILCV 89
Score = 31.1 bits (67), Expect = 0.33
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 265 PEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAXR 423
P +LYI NL +++ + L +F+ FG++I S +A G AF+ +E A R
Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGR 72
Query: 424 A 426
A
Sbjct: 73 A 73
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 34.3 bits (75), Expect = 0.035
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLMQ 204
L V +P + + + F G+LES R Y FV + +DA A ++ G +
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLS 84
Query: 205 NKTLKVSHA 231
L++ A
Sbjct: 85 GNPLRIEFA 93
Score = 33.5 bits (73), Expect = 0.061
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 16 PTKLIVNYIPEVMTQD--MMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFN 189
P++++ P + D ++ ++FS+ G++ + R Y FV++ A KA+++
Sbjct: 149 PSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQ 208
Query: 190 GLLMQNKTLKVSHALLNP 243
G L N + + A P
Sbjct: 209 GKLFGNPRVHICFAKSEP 226
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 280 NLYICNLPNELTLQDLHGLFAQFGRIINSRIAAG--IAFVLYEHQYEAXRA 426
+L++ NLP+ + ++L F +FG + + G AFV + H +A A
Sbjct: 24 HLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAA 74
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.3 bits (75), Expect = 0.035
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +1
Query: 16 PTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKAR 177
PT L+V + Q+ + F G ++ L + RG+GF+++ P DA +A+
Sbjct: 36 PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK 95
Query: 178 KAFNGLLMQNKTLKVSHALLNPELKPPTK 264
+G L+ + L V A N K PT+
Sbjct: 96 HQMDGYLLLGRELTVVFAEEN--RKKPTE 122
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 34.3 bits (75), Expect = 0.035
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 280 NLYICNLPNELTLQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
++Y+ N + DL LF++FGR+ + +G AFV +E + +A A
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDA 51
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 10 ESPTK--LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKA 183
+ PTK ++N+ P + M F GK+ + ++ R + FV++ +DA KA +
Sbjct: 91 QRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRM--RRNFAFVQFATQEDATKALDS 148
Query: 184 FNGLLMQNKTLKVSHAL 234
+ + +K + V +AL
Sbjct: 149 THNSKLLDKVVSVEYAL 165
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 34.3 bits (75), Expect = 0.035
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGK--LESCKLIANRGYGFVEYTRPDDAVKARKAFNGLL 198
L+V ++P+ + D++ LFS G + C R FV++ A +A + NGL
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 199 MQNKTLKVSHA 231
K L+V A
Sbjct: 90 FLGKVLQVQRA 100
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.9 bits (74), Expect = 0.046
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 31 VNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYG------FVEYTRPDDAVKARKAFNG 192
V IP +T+ + ++FS G++ LI ++G G F+ Y + A NG
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
Query: 193 LLMQNKTLKVSH 228
L+ +T+KV H
Sbjct: 100 ALVLGRTIKVDH 111
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 33.9 bits (74), Expect = 0.046
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 25 LIVNYIP-EVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLM 201
L VNY+P E +D++ + F GK+ + N FV++++ ++A A +A + +M
Sbjct: 440 LFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDA-VM 498
Query: 202 QNKTLKV 222
N+ +K+
Sbjct: 499 GNRFIKL 505
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 33.9 bits (74), Expect = 0.046
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 25 LIVNYIP-EVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLM 201
L VNY+P E +D++ + F GK+ + N FV++++ ++A A +A + +M
Sbjct: 440 LFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDA-VM 498
Query: 202 QNKTLKV 222
N+ +K+
Sbjct: 499 GNRFIKL 505
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 33.9 bits (74), Expect = 0.046
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKAF 186
L V + T+D + + S G++++ +L+ A+RGYGFVEY + ++A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 187 NGLLMQNKTLKVSH 228
+ L+ + + V +
Sbjct: 126 HHSLIDGREIIVDY 139
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 33.9 bits (74), Expect = 0.046
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQN--KTLKVSHALLNPELKPPTKPEADWNLYIC 294
+ GYGFVE+ D A K + FNG M N + +++ A + K D ++++
Sbjct: 143 SEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVG 202
Query: 295 NLPNELTLQDLHGLFAQ 345
+L +++ LH F++
Sbjct: 203 DLSPDVSDNLLHETFSE 219
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
++GYGFV + ++ KA NG+ ++ +++ A
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA 274
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.061
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Frame = +1
Query: 13 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA 174
S KL + + T + + SLFS+ G LE +I ++ GYGFV + D A+ A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLA 132
Query: 175 RKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGR 354
K + + T+ A N + +Y+ N+P ++ L F +G
Sbjct: 133 LKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGD 192
Query: 355 I 357
+
Sbjct: 193 V 193
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.061
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Frame = +1
Query: 13 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA 174
S KL + + T + + SLFS+ G LE +I ++ GYGFV + D A+ A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLA 132
Query: 175 RKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGR 354
K + + T+ A N + +Y+ N+P ++ L F +G
Sbjct: 133 LKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGD 192
Query: 355 I 357
+
Sbjct: 193 V 193
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.5 bits (73), Expect = 0.061
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
+++ V + +T+ + S F GK+ C+++ R G+GF+ +T A A K
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 181 AFNGLLMQNKTLKVSHA 231
+G + NK + V+ A
Sbjct: 72 HMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.5 bits (73), Expect = 0.061
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
+++ V + +T+ + S F GK+ C+++ R G+GF+ +T A A K
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 181 AFNGLLMQNKTLKVSHA 231
+G + NK + V+ A
Sbjct: 72 HMHGRELGNKVISVNKA 88
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.1 bits (72), Expect = 0.081
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +1
Query: 4 PEESPT-KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
P+ S T L+V I T D ++ LF+ GK+ + +R G+ FV Y D+
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLNPELKPPTK 264
A KA + +G ++ + + V A P + +K
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISK 103
Score = 33.1 bits (72), Expect = 0.081
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Frame = +1
Query: 277 WNLYICNLPNELTLQDLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAXRA 426
++L + N+ T DL+ LFA++G++++ I + G AFV Y+++ EA +A
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.1 bits (72), Expect = 0.081
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +1
Query: 4 PEESPT-KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDD 162
P+ S T L+V I T D ++ LF+ GK+ + +R G+ FV Y D+
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 163 AVKARKAFNGLLMQNKTLKVSHALLNPELKPPTK 264
A KA + +G ++ + + V A P + +K
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISK 103
Score = 33.1 bits (72), Expect = 0.081
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Frame = +1
Query: 277 WNLYICNLPNELTLQDLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAXRA 426
++L + N+ T DL+ LFA++G++++ I + G AFV Y+++ EA +A
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.1 bits (72), Expect = 0.081
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVK 171
E+ +L + + D++ F+ K+I ++ GYGFV + P D
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 172 ARKAFNGLLMQNKTLKV 222
A K NG + N+ +K+
Sbjct: 194 ALKEMNGKYVGNRPIKL 210
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.7 bits (71), Expect = 0.11
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = +1
Query: 7 EESPTK-LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDA 165
E PT L+V + E ++M+ FS ++ +L+ +RG+ FV + +DA
Sbjct: 453 ETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDA 512
Query: 166 VKARKAFN--GLLMQNKTLKVSHA 231
KA +A N L K L+V++A
Sbjct: 513 TKALEATNRTALERNGKILRVAYA 536
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.7 bits (71), Expect = 0.11
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 PEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDA 165
P KL + + ++ + + F G+L K+I ++ GY F+EYT + A
Sbjct: 277 PPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAA 336
Query: 166 VKARKAFNGLLMQNKTLKVSHALLNPELKPPTKP 267
A K NG ++ + V A P + ++P
Sbjct: 337 GTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQP 370
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 10 ESPTK--LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKA 183
+ PTK ++N+ P + M F GK+ + ++ R + FV++ +DA KA +
Sbjct: 65 QRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRM--RRNFAFVQFATQEDATKALDS 122
Query: 184 FNGLLMQNKTLKVSHAL 234
+ + +K + V +AL
Sbjct: 123 THNSKLLDKVVSVEYAL 139
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 244 ELKPPTKPEAD--WNLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
E + P +P+A+ NL++ L T + L FAQFG + ++++
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKV 87
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.3 bits (70), Expect = 0.14
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 256 PTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIA 375
P K LY+CN+P + L +F FG +I+ ++
Sbjct: 101 PVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVS 140
Score = 30.3 bits (65), Expect = 0.57
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Frame = +1
Query: 16 PTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKAR 177
P +L V IP + +F G + S ++ N RG G+V + A A
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 178 KAFNGLLMQNKTLKVSHAL-------LNPELKPPTKP-----EADWNLYICNLPNELTLQ 321
+ +G + + ++V +++ NPE+ T E+ +Y+ NLP
Sbjct: 167 ASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 226
Query: 322 DLHGLFAQFGRIINSRI 372
L F++FG I+++R+
Sbjct: 227 GLRNHFSKFGTIVSTRV 243
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.19
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRG------YGFVEYTRPDDAV 168
+ T L + IP + + + FS G ++ ++ N+ +GF+++ P+ A
Sbjct: 56 QNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115
Query: 169 KARKAFNGLLMQNKTLKVSHALLNPELKP 255
A A N L+ LKV H + +KP
Sbjct: 116 IAAGAMNDYLLMEHMLKV-HVIEPENVKP 143
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 241 PELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIA 375
P PP + +A LYI +P+ ++ F+QFG + R+A
Sbjct: 49 PVTTPPLQNKATV-LYIGRIPHGFYETEIEAFFSQFGTVKRVRVA 92
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +1
Query: 73 SLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL 234
+LF+ GK+ ++I +R G+GFV + + KA + NG + + ++VS A
Sbjct: 267 NLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 326
Query: 235 LNP 243
P
Sbjct: 327 ARP 329
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKA 183
KL V + + + LF + G +E ++I +RG+GFV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 184 FNGLLMQNKTLKVS 225
FNG + + L+V+
Sbjct: 160 FNGYEFEGRPLRVN 173
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +1
Query: 73 SLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL 234
+LF+ GK+ ++I +R G+GFV + + KA + NG + + ++VS A
Sbjct: 275 NLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
Query: 235 LNP 243
P
Sbjct: 335 ARP 337
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKA 183
KL V + + + LF + G +E ++I +RG+GFV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 184 FNGLLMQNKTLKVS 225
FNG + + L+V+
Sbjct: 160 FNGYEFEGRPLRVN 173
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDDAVKARKA 183
+L V +P +T + +F G + +++ +RG+GFV ++A +A +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 184 FNGLLMQNKTLKVS 225
FN + +T+KV+
Sbjct: 177 FNSSQIGGRTVKVN 190
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA--LLNPELKPPTKPEAD 276
+RG+GF+ + ++ A NG+ ++ + L+++ A P + PP+ E +
Sbjct: 259 SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGE 312
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRI 372
LY+ NLP +T +L +F + G +++ +I
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = +1
Query: 280 NLYICNLPNELTLQDLHGLFAQFGRIINSRI----AAGIA----FVLYEHQYEAXRA 426
NL+I N+P E Q+L F FG ++++++ A G++ FV Y+ Q A A
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Score = 26.6 bits (56), Expect = 7.0
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRG------YGFVEYTRPDD 162
GPE + L + IP + + F + G + S K+ ++ +GFV Y
Sbjct: 345 GPEGA--NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAA 402
Query: 163 AVKARKAFNGLLMQNKTLKV 222
A A NG + K LKV
Sbjct: 403 AQNAIDMMNGRHLGGKKLKV 422
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.25
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
+++ N E DL LF ++GR+ + +G AFV +E + +A A
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDA 51
Score = 31.1 bits (67), Expect = 0.33
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 16 PTK--LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFN 189
PTK ++N+ P + + F GK+ + ++ R + FV++ +DA KA +A
Sbjct: 91 PTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRI--RRNFSFVQFETQEDATKALEATQ 148
Query: 190 GLLMQNKTLKVSHAL 234
+ ++ + V +AL
Sbjct: 149 RSKILDRVVSVEYAL 163
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAFN 189
LI+ ++P + F G++ + +LI ++ G GFVE+T D+A K R ++
Sbjct: 813 LIIAHVPRRTKISHIIDFFKDAGQVVNVRLIVDQKGKPFGRGFVEFTSADEAKKVRLVYS 872
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 31.5 bits (68), Expect = 0.25
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Frame = +1
Query: 61 DMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA----RKAFNGLLMQNK 210
D + F G++E CK + ++ GYGF+ + A A +K + +
Sbjct: 142 DSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQ 201
Query: 211 TLKVSHALLNPELKPPT--KPE-ADWNLYICNLPNELTLQDLHGLFAQFGRI 357
+ NP + P PE +Y+ N+ ++ Q L F++FG I
Sbjct: 202 LASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEI 253
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGL---LMQ 204
M ++ ++ F+ G++ S K+I N+ GYGF+E+ A + + FN
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 205 NKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELT 315
++ +++ A L+ K P D+ +++ +L ++T
Sbjct: 133 DQLFRLNWASLSSGDKRDDSP--DYTIFVGDLAADVT 167
Score = 29.5 bits (63), Expect = 1.00
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Frame = +1
Query: 124 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPEL----------KPPTKPEA 273
+GYGFV ++ + ++A NG+ + +++ A + +
Sbjct: 197 KGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDN 256
Query: 274 DWN---LYICNLPNELTLQDLHGLFAQFGRIINSRIAAG 381
D N +++ L +T L +F+Q+G I++ +I AG
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG 295
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 31.1 bits (67), Expect = 0.33
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +1
Query: 16 PTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKAR 177
P+ L++ +P + + F G L+ L N RG+GFV+Y +DA +A
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 178 KAFNGLLMQNKTLKVSHA 231
K N ++ + + + A
Sbjct: 106 KRMNHKVIGGREIAIVFA 123
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNP 243
+RG+GFV + +DA +A NG N L+V A P
Sbjct: 253 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 293
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 31.1 bits (67), Expect = 0.33
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 186
KL V + + T+ + +FS G +E + + RGY FV+++ + A+ A KA
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 187 NGLLMQNKTLKVSHALLNPELKPPTKP 267
NGL T++ S L P KP
Sbjct: 268 NGLF----TIRGSDQPLIVRFADPKKP 290
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.7 bits (66), Expect = 0.43
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 124 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL-LNPELKPPTKP 267
RG+G+VE+ DA KA+ +G + K +K + L ++ P KP
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKP 187
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 30.7 bits (66), Expect = 0.43
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 124 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL-LNPELKPPTKP 267
RG+G+VE+ DA KA+ +G + K +K + L ++ P KP
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKP 187
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 30.3 bits (65), Expect = 0.57
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKARK 180
TKL + + + + FS+ + +++ N RGYGFV + D A A
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 181 AFNGLLMQNKTLKVSHALLNPEL 249
A NG + + V+ A P L
Sbjct: 91 AMNGQELNGFNISVNVAKDWPSL 113
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 0.57
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNG--LLMQNKTLKVSHALLNPELKPPTKPEADWNLYIC 294
NRG+ F+EY A +++ + + + VS A + LYI
Sbjct: 214 NRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIK 273
Query: 295 NLPNELTLQDLHGLFAQFGRII 360
NLP ++T + L LF G+I+
Sbjct: 274 NLPRDITQERLKALFEHHGKIL 295
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 186
+L V + M++D + +F + G +E ++ + +G+GFV++ R +DA A
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345
Query: 187 NGLLMQNKTLKVS 225
L + + +KVS
Sbjct: 346 GQLEIAGRAIKVS 358
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 0.57
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Frame = +1
Query: 1 GPEESPTK--LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRP 156
GP+ S ++V+ + E ++ + + F G++++ L +R GY +EY +
Sbjct: 87 GPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKK 146
Query: 157 DDAVKARKAFNG--LLMQN 207
++A A A NG LL QN
Sbjct: 147 EEAQSAISAMNGAELLTQN 165
>At1g30540.1 68414.m03736 ATPase, BadF/BadG/BcrA/BcrD-type family
contains Pfam PF01869: BadF/BadG/BcrA/BcrD ATPase
family; similar to Transcriptional regulators of
NagC/XylR (ROK) family, sugar kinase (GI:15023013)
[Clostridium acetobutylicum]; similar to
N-acetylglucosamine kinase (EC 2.7.1.59) (GlcNAc kinase)
(Swiss-Prot:Q9UJ70) [Homo sapiens]
Length = 351
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 34 NYIPEVMTQDMMFSLFS-TMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLM 201
+++ + D + +L S TMGKL C LIA G G + Y +D +AR + G ++
Sbjct: 132 SHVKVYVQNDAIVALASGTMGKLHGCVLIA--GTGCIAYGFDEDGKEARASGGGPIL 186
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.9 bits (64), Expect = 0.75
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Frame = +1
Query: 4 PEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEY----TR 153
PE + +P T+ ++ FS GK+ +LI +R G G++E+ +
Sbjct: 163 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 222
Query: 154 PDDAVKARKAFNG--LLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDL 327
P + + F G ++++ + + A N T P AD LY+ NL ++ L
Sbjct: 223 PMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGP-ADRKLYVGNLHFNMSELQL 281
Query: 328 HGLFAQFGRI 357
+F FG +
Sbjct: 282 RQIFEAFGPV 291
Score = 29.9 bits (64), Expect = 0.75
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +1
Query: 1 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDD 162
G + KL V + M++ + +F G +E +L + +G+GF+++ + +
Sbjct: 259 GTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEH 318
Query: 163 AVKARKAFNGLL-MQNKTLKVS 225
+ A+ A NG L + +T+KVS
Sbjct: 319 SKAAQIALNGKLEIAGRTIKVS 340
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.9 bits (64), Expect = 0.75
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Frame = +1
Query: 10 ESPTKLIVNYIPEVMTQDMMFSLFSTMGK-LESCKLIA-------NRGYGFVEYTRPDDA 165
E+ +L + IP+ T+D + +G +E+ +LI NRG+ FV Y A
Sbjct: 193 ETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACA 252
Query: 166 VKARKAF--NGLLMQNKTLKVSHALLNPELKPPTKPEADW--NLYICNLPNELTLQDLHG 333
+R+ + ++ V+ A +P+ P A LY+ N+P + + L
Sbjct: 253 DYSRQKMIDSNFKLEGNAPTVTWA--DPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKE 310
Query: 334 LFAQFGRI 357
LF + G +
Sbjct: 311 LFQRHGEV 318
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.9 bits (64), Expect = 0.75
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 280 NLYICNLPNELTLQDLHGLFAQFGRIINSRIAAG-----IAFVLYEHQYEAXRA 426
++Y+ NLP ++ ++ +F ++GRI++ + FV +EH +A A
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDA 61
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 29.9 bits (64), Expect = 0.75
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +1
Query: 157 DDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQDLH 330
D+ K + + + LK L +P+ K P + +D + +CN+ +E + +DL+
Sbjct: 824 DENEKLMSLYENAMKEKDELK--RLLSSPDQKKPIEANSDTEMELCNISSEKSTEDLN 879
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 29.9 bits (64), Expect = 0.75
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLMQ 204
L V+ + +T + + LFS G + C + ++ ++EY+ ++A A A N +
Sbjct: 353 LQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEAT-AALALNNTEVF 411
Query: 205 NKTLKVSHALLNPELKP 255
+ L V A P KP
Sbjct: 412 GRALNVEIAKSLPH-KP 427
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 0.75
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 244 ELKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
E+KPP D L++C L +DLH +F++FG ++++ +
Sbjct: 237 EVKPP-----DNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADV 274
>At1g26810.1 68414.m03267 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 643
Score = 29.9 bits (64), Expect = 0.75
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 136 FVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELT 315
F+ T D V+ + L M N T + + L+N + +P P++ W + P E
Sbjct: 485 FIMKTDDDAFVRVDEVLLSLSMTNNTRGLIYGLINSDSQPIRNPDSKWYISYEEWPEEKY 544
Query: 316 LQDLHG 333
HG
Sbjct: 545 PPWAHG 550
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 29.5 bits (63), Expect = 1.00
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 280 NLYICNLPNELTLQDLHGLFAQFGRIINSRI 372
NL+I N+P E Q+L F FG ++++++
Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKV 379
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 29.5 bits (63), Expect = 1.00
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNG 192
N GYGFV T P+ A + KAF+G
Sbjct: 470 NVGYGFVNMTSPEAAWRFYKAFHG 493
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 29.5 bits (63), Expect = 1.00
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKA--FNGLLMQNKTLKVS 225
++ +++ LF G +E + G+V +T + A+KAR A F G L+ V+
Sbjct: 235 VSSEVLKDLFQRFGSVEHIEYSGGLDSGYVWFTDSETAMKARAAVEFVGGLVVKNNFSVA 294
Query: 226 HALLNPELK 252
+N E++
Sbjct: 295 LEAINGEME 303
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 29.5 bits (63), Expect = 1.00
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKA--FNGLLMQNKTLKVS 225
++ +++ LF G +E + G+V +T + A+KAR A F G L+ V+
Sbjct: 235 VSSEVLKDLFQRFGSVEHIEYSGGLDSGYVWFTDSETAMKARAAVEFVGGLVVKNNFSVA 294
Query: 226 HALLNPELK 252
+N E++
Sbjct: 295 LEAINGEME 303
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 29.5 bits (63), Expect = 1.00
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 52 MTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKA--FNGLLMQNKTLKVS 225
++ +++ LF G +E + G+V +T + A+KAR A F G L+ V+
Sbjct: 289 VSSEVLKDLFQRFGSVEHIEYSGGLDSGYVWFTDSETAMKARAAVEFVGGLVVKNNFSVA 348
Query: 226 HALLNPELK 252
+N E++
Sbjct: 349 LEAINGEME 357
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 29.5 bits (63), Expect = 1.00
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Frame = +1
Query: 31 VNYIPEVMTQDMMFSLFSTMGKLESCKLIANRG----YGFVEYTRPDDAVKARKAFNGLL 198
V+ I + +T++ + LFS+ G++ C++ + + FVE++ D ++ + G +
Sbjct: 132 VSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFS-DDQGARSALSLGGTM 190
Query: 199 MQNKTLKV---SHALL--NPELKPPTKPEADW---NLYICNLPNELTLQDLHGLF 339
+ ++V A+L NP P ++ E + +Y N+ T D++ F
Sbjct: 191 IGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFF 245
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
TK+ V +P ++ + + F G++ ++ +R GYGFV + + A +A K
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 181 AFNGLLMQNKTLKVSHALLNPELKP 255
N + + + A + ++KP
Sbjct: 73 DPNPTI-EGRITNCKLAFVGAKVKP 96
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRI 372
+Y+ ++ ++T + L GLF FG++++ RI
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRI 181
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 29.1 bits (62), Expect = 1.3
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
TK+ V + +D M F G++ +I ++ GYGFV + + A++A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 181 AFNGLLMQNKTLKVSHALLNPEL-KPPTKP 267
N ++ + + A L + +PPT P
Sbjct: 82 NMNPVI-DGRRANCNLACLGAQKPRPPTSP 110
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 262 KPEADWN-LYICNLPNELTLQDLHGLFAQFGRI 357
KP+A + +++ NLP + T++ L+ F FG I
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAI 301
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRII 360
LYI NLP ++T + L LF G+I+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKIL 61
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 1.7
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Frame = +1
Query: 16 PTKLIVNYIPEVMTQDMMFSLFSTMGKL--ESCKLI----ANRGYGFVEYTRPDDAVKAR 177
P KL V IP T+D + S F + G + CK+ A G F+ + D A +A
Sbjct: 160 PNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRA- 218
Query: 178 KAFNGLLMQNKTLKVSHALLNPELKPPTK-------PEA--DWN-LYICNLPNELTLQDL 327
AF+ M ++ L + + P + PE +N +YI NL + T +D+
Sbjct: 219 LAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDI 278
Query: 328 HGLFAQFGRIINS 366
LF+ +INS
Sbjct: 279 RKLFSDC--VINS 289
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
+KL V + + F++ G++ +IA+R G+GFV ++ D A A K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 181 AFNGLLMQNKTLKVSHA 231
+G + + ++V+ A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
+KL V + + F++ G++ +IA+R G+GFV ++ D A A K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 181 AFNGLLMQNKTLKVSHA 231
+G + + ++V+ A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 180
T++ V + T DM+ FS G + ++ +R G+GFV Y+ +A A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 181 AFNGLLMQNKTLKV 222
+G + + + V
Sbjct: 63 GMDGKELNGRRVSV 76
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 TKLIVNYIPE-VMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNG 192
T+L V + T+D+ LFS G++ + R Y FVE++ P DA AR +G
Sbjct: 11 TRLYVGRLSSRTRTRDLE-RLFSRYGRVRDVDM--KRDYAFVEFSDPRDADDARYYLDG 66
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
LY+ L + +DL LF+++GR+ + + AFV + +A A
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 186
KL V + + T+ + +F G +E L+ + RG GFV+Y+ + A+ A
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 187 NG 192
NG
Sbjct: 272 NG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 22 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 186
KL V + + T+ + +F G +E L+ + RG GFV+Y+ + A+ A
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 187 NG 192
NG
Sbjct: 272 NG 273
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 124 RGYGFVEYTRPDDAVKARKAFNGLL-MQNKTLK 219
+G+ F EY + A A K F+GL+ + N+TLK
Sbjct: 48 KGFAFAEYETEEIADYAVKLFSGLVSLYNRTLK 80
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Frame = +1
Query: 7 EESPTKLIVNYIPEVMTQDMMFSLFST--MGKLE------SCKLIANRGYGFVEYTRPDD 162
E+ T L++ IP T M+ S G + K N GY F+ P+
Sbjct: 740 EDRRTTLMIKNIPNKYTSKMLLSAIDEHCKGTYDFLYLPIDFKNKCNVGYAFINLIEPEK 799
Query: 163 AVKARKAFNG 192
V KAFNG
Sbjct: 800 IVPFFKAFNG 809
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = +1
Query: 244 ELKPPTKPEADW-------NLYICNLPNELTLQDLHGLFAQFGRI 357
E K P KP W ++Y+ LP+++T++++ +F++ G I
Sbjct: 258 EKKEPNKPPDSWFELKVNPHIYVNGLPDDVTIEEVAEVFSKCGII 302
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRI-----AAGIAFVLYEHQYEAXRA 426
+Y+ NLP ++ +++ LF+++G ++ + G AFV +E +A A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDA 61
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRI-----AAGIAFVLYEHQYEAXRA 426
+Y+ NLP ++ +++ LF+++G ++ + G AFV +E +A A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDA 61
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 TKLIVNYIPE-VMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNG 192
T+L V + T+D+ LFS G++ + R Y FVE+ P DA AR +G
Sbjct: 11 TRLYVGRLSSRTRTRDLE-RLFSRYGRVRDVDM--KRDYAFVEFGDPRDADDARHYLDG 66
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAXRA 426
LY+ L + +DL LF+++GR+ + + AFV + +A A
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60
>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
plant glutamate receptor family, PMID:11379626
Length = 940
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 304 NELTLQDLHGLFAQFGRIINSRIAAGIAFVLYEHQY 411
N L L GLF G I+ + +A LYEH++
Sbjct: 802 NRLNLSSFLGLFLIAGTAISFSLLVFVALFLYEHRH 837
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 247 LKPPTKPEADWNLYICNLPNELTLQDL 327
L PP+K D+++ + NLP + +Q L
Sbjct: 88 LSPPSKVHGDFSISVSNLPRNVRMQAL 114
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +1
Query: 277 WN--LYICNLPNELTLQDLHGLFAQFGRIINSRI-----AAGIAFVLYEHQYEAXRA 426
WN +Y+ NLP ++ ++ LF ++G I++ + G AFV +E +A A
Sbjct: 5 WNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDA 61
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 LYICNLPNELT---LQDLHGLFAQFGRIINSR 369
+YI NLP ++T L+DL G Q GRI R
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKR 313
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 LYICNLPNELT---LQDLHGLFAQFGRIINSR 369
+YI NLP ++T L+DL G Q GRI R
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKR 313
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +1
Query: 19 TKLIVNYIPEVMTQDMMFSLFSTMGKLES--CKLIANRG----YGFVEYTRPDDAVKARK 180
T + V ++P DM+ + F G + + ++I RG YGFVE+ D A +A +
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378
Query: 181 A 183
A
Sbjct: 379 A 379
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.1 bits (57), Expect = 5.3
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Frame = +1
Query: 31 VNYIPEVMTQDMMFSLFSTMGKLESCKLIAN----RGYGFVEYTRPDDAVKARKAFNGLL 198
V+ I + +T++ + LFS G++ C++ + + FVE+ A +A +L
Sbjct: 145 VSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTML 204
Query: 199 --MQNKTLKVSHALL--NPELKPPTKPEADW---NLYICNLPNELTLQDLHGLF 339
+ L A+L NP P ++ E + +Y N+ +++ D+ F
Sbjct: 205 GFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFF 258
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRIA--------AGIAFVLYEHQYEAXRA 426
LY+ L T L F QFG +I+ + G AF+ YE + EA +A
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL 234
+R +GFV + +DA A +G + + L V++AL
Sbjct: 53 HRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYAL 90
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 283 LYICNLPNELTLQDLHGLFAQFGRIINSRIAAGI----AFVLYEHQYEA 417
L++ NLP E T ++L L FG ++N++ G AF+ +E +A
Sbjct: 20 LHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQA 68
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 247 LKPPTKPEADWNLYICNLPNELTLQDLHGLFAQFGRIINSRIAA 378
L+PP + E+ LY+ L + + QD+H F +G + + R+ A
Sbjct: 216 LEPP-EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMA 258
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARK 180
NRGY F+E++ DA+ A K
Sbjct: 337 NRGYAFLEFSSRSDAMDAHK 356
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 136 FVEYTRPDDAVKARKAFNGLLMQNKTLKVSH 228
F+EY RP+ A + +G L N+ +K +
Sbjct: 204 FIEYRRPEATCDAAHSLHGRLYDNRIVKAEY 234
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +1
Query: 55 TQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKARK 180
TQ+ + + F + G++E C ++ + +GYGFV + A +A K
Sbjct: 420 TQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 25 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-ANRGYGFVEYTRPDDAVKARKAFNGLLM 201
+I+N P V + + +F G+++ + R FVE+ DA KA + NG ++
Sbjct: 186 VIMNLEPTVSSSTLRH-IFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVI 244
Query: 202 QNKTLKV 222
K + +
Sbjct: 245 SGKPMVI 251
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 26.6 bits (56), Expect = 7.0
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 13 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKA 174
+P+K+ V + +++ F + GK+ ++ +R G+GFV Y + A A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 175 RKAFNGLLMQNKTL 216
+A MQNK L
Sbjct: 94 MQA-----MQNKEL 102
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 288 VEIPVGFRFCWWLKFW 241
++ P GF F WW FW
Sbjct: 45 IDAPGGFLFEWWSVFW 60
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 121 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHA 231
+RG+GF+ + +A A NG+ + +T+ V A
Sbjct: 47 SRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
>At3g26260.1 68416.m03276 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 989
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 241 PELKPPTKPEADWNLYICNLPN 306
P+L+ P P+ ++N YI + PN
Sbjct: 572 PQLQVPVNPDTEYNAYIESEPN 593
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 288 VEIPVGFRFCWWLKFW 241
++ P GF F WW FW
Sbjct: 45 IDAPGGFLFEWWSVFW 60
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 288 VEIPVGFRFCWWLKFW 241
++ P GF F WW FW
Sbjct: 45 IDAPGGFLFEWWSVFW 60
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 288 VEIPVGFRFCWWLKFW 241
++ P GF F WW FW
Sbjct: 45 IDAPGGFLFEWWSVFW 60
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 288 VEIPVGFRFCWWLKFW 241
++ P GF F WW FW
Sbjct: 45 IDAPGGFLFEWWSVFW 60
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 288 VEIPVGFRFCWWLKFW 241
++ P GF F WW FW
Sbjct: 45 IDAPGGFLFEWWSVFW 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,697,299
Number of Sequences: 28952
Number of extensions: 161023
Number of successful extensions: 765
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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