Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B09f
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    31   0.47 
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  

>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = -2

Query: 351 CRHFLFIYLISFVR---NLRS*VLIVYFPLCPRTNKSMVYFL-IIANYS*RNSLVFVTDL 184
           CR +L +Y I   R   N  +  +++ F  C R    ++  + II      N +V  T +
Sbjct: 151 CRQYLSVYDIDVSRIYVNYHNHFIMLGF--CYRCLSIIIIIVTIIIIIIIVNVIVIFTII 208

Query: 183 AVVVFIILLSVVTIYLRNDVTFVLF 109
            +++F ++++V+ IYL+    F+LF
Sbjct: 209 IIIIFTVIVNVIAIYLQAFNYFLLF 233


>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 202 SIRYRSCCCCIHNIIVCG 149
           +I   +CCCCI N I+ G
Sbjct: 94  NINNNNCCCCIRNNIIMG 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,772,691
Number of Sequences: 59808
Number of extensions: 172978
Number of successful extensions: 332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)