Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B09f
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 109  KQNKSNIVTQVNCNHRQ*YYEYNNSKIGNEY*GVPLTIIS 228
            K  K +I T ++C+ +  YYE    ++ ++  G P +++S
Sbjct: 953  KAVKKHITTTIDCSTQSEYYEL---EVKDQKNGKPPSVVS 989


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 184 CCCCIHNIIVCG 149
           CC  + NI+ CG
Sbjct: 201 CCGALKNIVACG 212


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 180 VVVFIILLSVVTIYLRNDVTFVL 112
           +V+F+ +LSV  I   N +  +L
Sbjct: 5   LVIFVYILSVAVIIRANGINEIL 27


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -3

Query: 137 CVTMLLLFCFYHCF 96
           C+ ML ++C  +C+
Sbjct: 205 CIVMLGIYCRLYCY 218


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 142 NCNHRQ*YYEYNNSK 186
           +CN+   YY  NN K
Sbjct: 310 SCNYSNNYYNNNNYK 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,050
Number of Sequences: 438
Number of extensions: 2007
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)