Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B08f
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   6.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   6.0  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 300 LGRLKEQQVRP-HMELKPTLEPQGLLHKELEL 208
           +GR  +Q V+  +++    L+ QGLLH++  L
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRQGLLHRQFNL 640


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 287 FSRPSVSFLRQIRFFPLHLLNKFADN 364
           +SRP+ S+LR  +F P       ++N
Sbjct: 44  YSRPNWSYLRTPQFEPQQFEVSLSEN 69


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 287 FSRPSVSFLRQIRFFPLHLLNKFADN 364
           +SRP+ S+LR  +F P       ++N
Sbjct: 64  YSRPNWSYLRTPQFEPQQFEVSLSEN 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,034
Number of Sequences: 336
Number of extensions: 920
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)