Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B08f
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr...    27   3.5  
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr...    27   3.5  
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr...    27   3.5  

>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 1   GTRLTCKQSDNKHNVRQICVSF*LLPSLPPTRVLLLHWSPQ 123
           G+ L   + + K +V Q+ +S  +LP + PT+VL+   SPQ
Sbjct: 276 GSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQ 316


>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 1   GTRLTCKQSDNKHNVRQICVSF*LLPSLPPTRVLLLHWSPQ 123
           G+ L   + + K +V Q+ +S  +LP + PT+VL+   SPQ
Sbjct: 276 GSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQ 316


>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 1   GTRLTCKQSDNKHNVRQICVSF*LLPSLPPTRVLLLHWSPQ 123
           G+ L   + + K +V Q+ +S  +LP + PT+VL+   SPQ
Sbjct: 276 GSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQ 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,744,505
Number of Sequences: 28952
Number of extensions: 81357
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)