Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B07f
(381 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 1e-30
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 4e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 93 7e-20
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 61 3e-10
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 50 5e-07
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.008
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.008
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 34 0.034
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 33 0.078
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 0.73
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 29 1.3
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 1.3
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 1.7
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 27 3.9
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 3.9
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 6.8
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 26 9.0
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5) 26 9.0
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 1e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +3
Query: 174 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 353
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 4e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 176
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 93.1 bits (221), Expect = 7e-20
Identities = 37/88 (42%), Positives = 62/88 (70%)
Frame = +3
Query: 114 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 293
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 294 IIDAPGHRDFIKNMITGTSQADCAVLIV 377
++DAPGH+ F+ NMI+G +QAD VL++
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVI 253
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 61.3 bits (142), Expect = 3e-10
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +3
Query: 246 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVV 44
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 50.4 bits (115), Expect = 5e-07
Identities = 28/105 (26%), Positives = 51/105 (48%)
Frame = +3
Query: 63 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 242
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 243 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
++ ++ F + I+D PGH+DF ++ + D ++++
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.008
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 234 RGITI 248
RGIT+
Sbjct: 1987 RGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 36.3 bits (80), Expect = 0.008
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 203
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 204 VLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 130
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.3 bits (75), Expect = 0.034
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +3
Query: 51 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 203
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 204 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 344
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 33.1 bits (72), Expect = 0.078
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +3
Query: 27 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 200
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 201 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 344
+ + L R G D+ +T++D PGH IK +I G
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG 122
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 32.7 bits (71), Expect = 0.10
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Frame = +3
Query: 45 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 212
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 213 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIV 377
E A E S +T ID GH ++K I G + D A+L++
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVI 227
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 0.73
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 294 IIDAPGHRDFIKNMITGTSQADCAVLIV 377
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 239 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 239 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +3
Query: 237 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
GIT I + + + +D PGH F G D +++V
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVV 169
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 213 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+ K E ER ITI + Y +D PGH + M+ G + D A+L++
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLI 95
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 248 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 239 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 288 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
+T ID PGH F G + D VL+V
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVV 107
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 239 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -2
Query: 365 SAISLRGSCDH-VLDEISVSRSIN-DGNIVLA---SFELPESNIDCDTTLTLSL*FVQYP 201
SAIS S + ++ ++ S +N N +A + +++ TT+T S YP
Sbjct: 993 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTASTSVVFPTTITPSPNITSYP 1052
Query: 200 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
S+ + + +F D T N T V +++
Sbjct: 1053 SLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
Score = 26.6 bits (56), Expect = 6.8
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = -2
Query: 365 SAISLRGSCDH-VLDEISVSRSIN-DGNIVLA---SFELPESNIDCDTTLTLSL*FVQYP 201
SAIS S + +++ ++ S +N N ++A + + ++ TT+T S YP
Sbjct: 1797 SAISTTSSIESTIMESVASSIQLNITSNTMMAVNDTLKTTSTSAVFPTTITPSPNITSYP 1856
Query: 200 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
S+ + +F D T N T V +++
Sbjct: 1857 SLMTSAVGNFTSATSVVFDSTTPNATRLVRSISA 1890
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 239 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 239 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 147 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
+++ K +EM + K W +KLKAE E
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 48 HINIVVIGHVDSGKSTTTGHLI 113
H+ VIGH+ ST GHLI
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLI 190
>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1564
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 108 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 236
L + CGG+++ +E QE+ F+Y +L+ RER
Sbjct: 740 LFFGCGGLNEMLSFLAVQEVQELVISVFRYLVMLEDRAQSRER 782
>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
Length = 126
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 69 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 236
G GK+ + +K ++K+ +EK E E QEM K + ++K K E+++
Sbjct: 52 GKTKDGKTKRWKNKRWKNKSMEKQKMEKQEMEKQEMEKQKME-EQKMEKQKMEKQK 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,177,738
Number of Sequences: 59808
Number of extensions: 213050
Number of successful extensions: 547
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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