Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B07f
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   246   7e-68
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   245   2e-67
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   128   3e-32
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    95   2e-22
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.032
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.52 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.9  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.9  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   8.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  246 bits (602), Expect = 7e-68
 Identities = 115/116 (99%), Positives = 115/116 (99%)
 Frame = +3

Query: 30  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 209
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 210 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  245 bits (599), Expect = 2e-67
 Identities = 114/116 (98%), Positives = 115/116 (99%)
 Frame = +3

Query: 30  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 209
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 210 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  128 bits (308), Expect = 3e-32
 Identities = 59/59 (100%), Positives = 59/59 (100%)
 Frame = +3

Query: 201 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 59


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 95.1 bits (226), Expect = 2e-22
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +3

Query: 249 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 43


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 0.032
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 288 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 377
           VT +D PGH  FI     G    D  VL+V
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVV 224



 Score = 25.4 bits (53), Expect = 0.23
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 42  KTHINIVVIGHVDSGKST 95
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 51 INIVVIGHVDSGKST 95
          INI  IGHV  GKST
Sbjct: 43 INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 273 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 374
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 273 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 374
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 132 DKRTIEKFEKEAQEMG 179
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 132 DKRTIEKFEKEAQEMG 179
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 132 DKRTIEKFEKEAQEMG 179
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 43 FSLPIFG*SRITNC 2
          FSLPIFG   I +C
Sbjct: 57 FSLPIFGTRWIFSC 70


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 232 SRSAFSLSNTQAYLKDPLPISWASFSN 152
           +RS F L N    +KD L   ++ F+N
Sbjct: 78  TRSPFLLLNDPELIKDILIRDFSKFAN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,343
Number of Sequences: 438
Number of extensions: 1838
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)