Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B06f
         (418 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   2.5  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   5.9  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   5.9  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +1

Query: 103 LSRCLRALLDEITNRLSSLYTPPPFFFWVSYRPPLSLKCPQGGVIAH 243
           LSR     ++ +++      T P  ++W   R  L   C +    AH
Sbjct: 284 LSRACDVAMERVSSSTPYYQTKPQVYWWTPERAQLRELCKEASDNAH 330


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 334 NEDIINRLPRAFTARDKLENK 396
           +E+IINR P+    RD++ N+
Sbjct: 330 HEEIINRPPQVPGERDRIANE 350


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 334 NEDIINRLPRAFTARDKLENK 396
           +E+IINR P+    RD++ N+
Sbjct: 330 HEEIINRPPQVPGERDRIANE 350


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,567
Number of Sequences: 2352
Number of extensions: 7578
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 34205040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)