Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B06f
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99710-9|CAN99658.1| 402|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z99710-8|CAB16868.1| 383|Caenorhabditis elegans Hypothetical pr... 27 4.1
EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha 1,2-fuc... 27 4.1
Z81453-7|CAB03797.2| 457|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF264764-1|AAQ14296.1| 457|Caenorhabditis elegans sterol reduct... 26 9.5
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 26 9.5
AF068714-7|AAT68905.1| 592|Caenorhabditis elegans Egg laying de... 26 9.5
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 26 9.5
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 26 9.5
>Z99710-9|CAN99658.1| 402|Caenorhabditis elegans Hypothetical
protein F08A8.5b protein.
Length = 402
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 267 NNRPAFPKVGDNAPLRALQA*RGAVRDPEKKWGRC 163
N +P FPK+ D LR + V + WGRC
Sbjct: 132 NIQPLFPKLADQFTLRIIP--DSLVTHQQTNWGRC 164
>Z99710-8|CAB16868.1| 383|Caenorhabditis elegans Hypothetical
protein F08A8.5a protein.
Length = 383
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 267 NNRPAFPKVGDNAPLRALQA*RGAVRDPEKKWGRC 163
N +P FPK+ D LR + V + WGRC
Sbjct: 113 NIQPLFPKLADQFTLRIIP--DSLVTHQQTNWGRC 145
>EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha
1,2-fucosyltransferase protein.
Length = 383
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 267 NNRPAFPKVGDNAPLRALQA*RGAVRDPEKKWGRC 163
N +P FPK+ D LR + V + WGRC
Sbjct: 113 NIQPLFPKLADQFTLRIIP--DSLVTHQQTNWGRC 145
>Z81453-7|CAB03797.2| 457|Caenorhabditis elegans Hypothetical
protein B0250.9 protein.
Length = 457
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 QGFPNLFCLLPTLRIILFFSAPIFS 75
QGFP+ +P+L +ILF A F+
Sbjct: 404 QGFPSTIAHIPSLFVILFLVARAFT 428
>AF264764-1|AAQ14296.1| 457|Caenorhabditis elegans sterol reductase
protein.
Length = 457
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 QGFPNLFCLLPTLRIILFFSAPIFS 75
QGFP+ +P+L +ILF A F+
Sbjct: 404 QGFPSTIAHIPSLFVILFLVARAFT 428
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 26.2 bits (55), Expect = 9.5
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 178 FFWVSYRPPLSLKCPQGGVIAHFGKGWPIVXLCFTSGQLLRLHTMIHSNINSNEDI-INR 354
FF V+ L+ C G I K I +C T+ QL++ HT + N+N I I
Sbjct: 111 FFLVAESVELAKTCRAG--INDILKSSRIRHVCPTT-QLMKYHTWLTMNVNERRKIPIKL 167
Query: 355 LPRAFTA--RDKLENKC 399
+ + F++ +K+ KC
Sbjct: 168 IIKTFSSGKPEKMVQKC 184
>AF068714-7|AAT68905.1| 592|Caenorhabditis elegans Egg laying
defective protein 8,isoform c protein.
Length = 592
Score = 26.2 bits (55), Expect = 9.5
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 178 FFWVSYRPPLSLKCPQGGVIAHFGKGWPIVXLCFTSGQLLRLHTMIHSNINSNEDI-INR 354
FF V+ L+ C G I K I +C T+ QL++ HT + N+N I I
Sbjct: 111 FFLVAESVELAKTCRAG--INDILKSSRIRHVCPTT-QLMKYHTWLTMNVNERRKIPIKL 167
Query: 355 LPRAFTA--RDKLENKC 399
+ + F++ +K+ KC
Sbjct: 168 IIKTFSSGKPEKMVQKC 184
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 26.2 bits (55), Expect = 9.5
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 178 FFWVSYRPPLSLKCPQGGVIAHFGKGWPIVXLCFTSGQLLRLHTMIHSNINSNEDI-INR 354
FF V+ L+ C G I K I +C T+ QL++ HT + N+N I I
Sbjct: 111 FFLVAESVELAKTCRAG--INDILKSSRIRHVCPTT-QLMKYHTWLTMNVNERRKIPIKL 167
Query: 355 LPRAFTA--RDKLENKC 399
+ + F++ +K+ KC
Sbjct: 168 IIKTFSSGKPEKMVQKC 184
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 26.2 bits (55), Expect = 9.5
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 178 FFWVSYRPPLSLKCPQGGVIAHFGKGWPIVXLCFTSGQLLRLHTMIHSNINSNEDI-INR 354
FF V+ L+ C G I K I +C T+ QL++ HT + N+N I I
Sbjct: 111 FFLVAESVELAKTCRAG--INDILKSSRIRHVCPTT-QLMKYHTWLTMNVNERRKIPIKL 167
Query: 355 LPRAFTA--RDKLENKC 399
+ + F++ +K+ KC
Sbjct: 168 IIKTFSSGKPEKMVQKC 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,756,695
Number of Sequences: 27780
Number of extensions: 166396
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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