Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B05f
(356 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 31 0.36
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 0.84
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 1.1
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 1.1
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 1.9
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 28 1.9
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 3.4
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 4.5
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4) 27 4.5
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03) 27 5.9
SB_37420| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12) 26 7.8
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 30.7 bits (66), Expect = 0.36
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 190 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 309
L I C Y KN +D +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 0.84
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 2 GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 136
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 0.84
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 193 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 77
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 221 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 90
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 221 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 90
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 25 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 204
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 205 IC 210
+C
Sbjct: 500 MC 501
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 28.3 bits (60), Expect = 1.9
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Frame = -2
Query: 280 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 131
G + GY P+ + S R Y + LPP+ P SS + ++ P + E+
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418
Query: 130 -----RQRSLSSYPNRRYGSWDQVHPDR 62
RQ SY +RRYG ++ +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446
>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1127
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 203 RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 90
R +S+ S+ SC+ S + SGK + LF KS+ R
Sbjct: 983 RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 175 AVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 68
A+ TP+ R E+RQR+ ++ RR S D ++P
Sbjct: 102 AIFTLATPNRRPTETRQRAANTPSARRPSSPDVINP 137
>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
Length = 617
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 184 LSSAVHIRRTP--SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 44
LS ++I P S SR +S P R + +HPD S SDT
Sbjct: 140 LSDTLNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 249 LILSAVLYEVLIAADTS-CLQSL*AQLFIFVGHQVHAQWKVVN 124
L LSAV+ +L DT ++ L F+FV Q QW +N
Sbjct: 4116 LTLSAVVLFILRMLDTQKTIKKLRENPFVFVSFQYATQWAELN 4158
>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
Length = 1397
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 124 VDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD-QFH 255
+D P C VS YE + + R C K L ++C D +FH
Sbjct: 1061 LDPTPECTERVSKTYESGHTLSTATARQQCLKELKESCNDDLEFH 1105
>SB_37420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 280 GKGEVSCGYGTDPFRSSLRGTYC-SRYVLPPKPLSSAVHI 164
G GE++CG+G D R Y R L P + + H+
Sbjct: 257 GSGEMNCGHGLDTDREEWENGYAIMRLDLTPAGIGNPDHL 296
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +2
Query: 239 ERISSISA*DFTLSTLSASIKCYHALELIGSRL 337
+++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 731 QKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 763
>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
Length = 1225
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -2
Query: 157 TPSARTVESRQRSLSSYPNRRYGSWDQV 74
TP+ + + R++ ++SY R+ WD++
Sbjct: 825 TPNTQRTKERKKDVNSYQARKTSLWDEL 852
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,864
Number of Sequences: 59808
Number of extensions: 272262
Number of successful extensions: 966
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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