Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B05f
(356 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 211 9e-56
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 211 9e-56
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 211 1e-55
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 1.2
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 1.6
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 2.1
At5g48310.1 68418.m05968 expressed protein 27 2.8
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 2.8
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 3.7
At1g53180.1 68414.m06027 expressed protein 27 3.7
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 27 4.9
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 27 4.9
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 4.9
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 26 6.4
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 26 6.4
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 26 6.4
At3g19680.1 68416.m02493 expressed protein 26 6.4
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 26 8.5
At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containi... 26 8.5
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 211 bits (516), Expect = 9e-56
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = +1
Query: 1 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 180
GRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61
Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 354
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 211 bits (516), Expect = 9e-56
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = +1
Query: 1 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 180
GRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61
Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 354
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 211 bits (515), Expect = 1e-55
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = +1
Query: 1 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 180
GRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 354
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 181 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 312
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 178 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 300
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 157 SDEYEQLSSEALEAGRICCNKYLV 228
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 205 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 294
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 174 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAP 1
LF+ + +++ A K+ N L + I+ +L T+ R+R F+ AVP SC P P
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLP 792
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 109 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 282
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 211 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 306
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 7 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 111
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 26.6 bits (56), Expect = 4.9
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -2
Query: 298 Y*CG*RGKGEVSCGYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRS 119
Y CG RG E +C P ++ G+Y SR P K S + RR+PS SR RS
Sbjct: 124 YRCGERGHIERNCKNSPSPKKARQGGSY-SR--SPVK--SRSPRRRRSPSRSRSYSRGRS 178
Query: 118 LS 113
S
Sbjct: 179 YS 180
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 26.6 bits (56), Expect = 4.9
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -2
Query: 298 Y*CG*RGKGEVSCGYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRS 119
Y CG RG E +C P ++ G+Y SR P K S + RR+PS SR RS
Sbjct: 83 YRCGERGHIERNCKNSPSPKKARQGGSY-SR--SPVK--SRSPRRRRSPSRSRSYSRGRS 137
Query: 118 LS 113
S
Sbjct: 138 YS 139
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 73 VPDPKIRIFDLGKKRATVDDFPL 141
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 178 SSEALEAGRICCNKYLVKNCGKDQFHIR 261
S E G CC Y ++C D H R
Sbjct: 911 SRERCHHGSNCCRSYAKESCSHDHHHTR 938
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 112 KRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 219
K A DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 169 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 294
E +S + A C NK+ K C + I+ HPFH +R+
Sbjct: 130 ESKTSRSYYACLECGNKFH-KQCVESPLEIKHPSHPFHSLRL 170
>At3g19680.1 68416.m02493 expressed protein
Length = 491
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 161 SDTKCTHSGKSSTVALFLPKSKIRILGS 78
S+T+C+ SG STVA SK +I S
Sbjct: 69 SETRCSSSGNVSTVAACFSLSKAQIEAS 96
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 28 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDE 165
+CK++ R+C P+ R GK + LCVH V++E
Sbjct: 248 HCKSQCINHGRYCAPDPEDNFREGYEGKDVVLENLRQLCVHRVANE 293
>At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 598
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 166 YEQLSSEALEAGRICCNKYLVKNCGKDQ 249
YE ++ EALE CNK L+K +Q
Sbjct: 566 YEGMAKEALELLNELCNKGLMKKSSAEQ 593
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,928
Number of Sequences: 28952
Number of extensions: 184668
Number of successful extensions: 625
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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