Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B03f
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   0.72 
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   6.7  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.9  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    24   8.9  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    24   8.9  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +2

Query: 143 IINSSSTLQKRFSKIYLLSFFIF*IKLYKIPLITLSFCF*LSFFIPFGDNFIAIIT 310
           II S S+L K+   +++LSFF++   L +   + L+  F +SF +  G  F+A+++
Sbjct: 338 IIASFSSLLKKLLTLFVLSFFVY--PLVQEFCLFLACSFVVSFLL-HGSFFLAVLS 390


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 183 KFTFYLFLFFKSNFIRFL*SHYPF 254
           K TF L  FF + F RFL   YP+
Sbjct: 379 KSTFTLRQFFHNEFPRFLPHAYPY 402


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 58  YKHEC*HRKINITTCNFRVYDKVKYVITNNK 150
           Y+  C  R+  IT C  + YD VK     N+
Sbjct: 359 YRISCHQREEEITRCATQAYDAVKAAEKRNE 389


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 218 KLYKIPLITLSFCF*LSFFIPFGDNFIAIITK 313
           K +  PL+ L +C  +S F+   D F  ++ K
Sbjct: 107 KAWTQPLVFLYYCAYISKFLELTDTFFLVLRK 138


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 46  RKNIYK-HEC*HRKINITTCNFRVYDKV 126
           R+++Y   +C H+   I +CN +  D V
Sbjct: 11  RRSVYNLKKCLHKGFQINSCNIKAADNV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,917
Number of Sequences: 5004
Number of extensions: 22812
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)