Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B03f
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.9  

>SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 171 FWRVLELFI-ISNYIFNFVVNSEIACGNINLSVST 70
           F R+L+ F  IS+Y  N V+N +   G  N+  ST
Sbjct: 270 FTRILDFFPHISSYFINSVINEKHQSGKTNIEAST 304


>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +3

Query: 213  KSNFIRFL*SHYPFVFNYHSLFLSETILLQSLQNSVKREPADIQDVFIQSQFIRIFLLXA 392
            K   IRF      +VF +    +   + + +  ++    P  +  +++Q+ F  +  L  
Sbjct: 892  KMRSIRFYVRTLLYVFKWMYDSMPPFLRVVTCSSTADCYPPALTMLYLQTAFYAVAALVN 951

Query: 393  QFNLPECW 416
             F +PECW
Sbjct: 952  AFRIPECW 959


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,273,001
Number of Sequences: 59808
Number of extensions: 139704
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)