Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B03f
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z81556-3|CAB04521.2|  364|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 159 LELFIISNYIFNFVVNSEI--ACGNINLSVSTFMFINVFAY 43
           + +F ISN ++NF+++S I   C  I    STF+ + +F +
Sbjct: 190 IRIFYISNLLYNFLISSVIQDRCLYIIQLCSTFLLVFIFIF 230


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 159 LELFIISNYIFNFVVNSEI--ACGNINLSVSTFMFINVFAY 43
           + +F ISN ++NF+++S I   C  I    STF+ + +F +
Sbjct: 190 IRIFYISNLLYNFLISSVIQDRCLYIIQLCSTFLLVFIFIF 230


>U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical
           protein C17G10.7 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 198 LFLFFKSNFIRFL*SHYPFVFNYHSLFLSETILLQSLQNS 317
           L +FF + F+ FL S Y  ++N+  +FLS  +LL+ + +S
Sbjct: 53  LLMFFVNTFVVFL-SMYG-LYNFRPVFLSPNVLLKIILSS 90


>Z81556-3|CAB04521.2|  364|Caenorhabditis elegans Hypothetical
           protein F58G1.3 protein.
          Length = 364

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 165 RVLELFIISNYIFNFVVNSEIACGNINLSVS 73
           R++ +F + NY   F   + + C N NL VS
Sbjct: 291 RLITVFSVPNYCAQFTNAAAVVCLNANLQVS 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,364,247
Number of Sequences: 27780
Number of extensions: 124560
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)