Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301B01f
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 131 3e-31
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 129 1e-30
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 128 1e-30
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 124 3e-29
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 124 3e-29
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 35 0.025
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 34 0.057
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa... 30 0.70
At2g15345.1 68415.m01755 expressed protein 30 0.93
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 28 3.8
At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains... 27 5.0
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 27 5.0
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 27 6.6
At5g45360.1 68418.m05569 F-box family protein similar to SKP1 i... 27 8.7
At1g55620.2 68414.m06367 voltage-gated chloride channel family p... 27 8.7
At1g55620.1 68414.m06366 voltage-gated chloride channel family p... 27 8.7
At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containi... 27 8.7
At1g04200.1 68414.m00410 expressed protein Contains similarity t... 27 8.7
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 131 bits (316), Expect = 3e-31
Identities = 59/110 (53%), Positives = 77/110 (70%)
Frame = +2
Query: 83 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 262
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 263 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 64 KKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 129 bits (311), Expect = 1e-30
Identities = 58/102 (56%), Positives = 74/102 (72%)
Frame = +2
Query: 107 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 286
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 287 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 128 bits (310), Expect = 1e-30
Identities = 58/102 (56%), Positives = 74/102 (72%)
Frame = +2
Query: 107 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 286
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 287 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 124 bits (299), Expect = 3e-29
Identities = 53/110 (48%), Positives = 81/110 (73%)
Frame = +2
Query: 83 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 262
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 263 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 124 bits (299), Expect = 3e-29
Identities = 53/110 (48%), Positives = 81/110 (73%)
Frame = +2
Query: 83 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 262
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 263 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 412
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 35.1 bits (77), Expect = 0.025
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 185 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 361
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEF 173
Query: 362 LTKSGLVKPEQ 394
+T + PE+
Sbjct: 174 ITDTWPDVPER 184
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 33.9 bits (74), Expect = 0.057
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +2
Query: 47 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 208
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
profile PF01554: MatE Uncharacterized membrane protein
family
Length = 502
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -1
Query: 300 CSTTVP-LHANSFLHARTIFFRSYSEERP---CTVVSVL 196
CS ++P L ANSFLH I+ R P CT+VSVL
Sbjct: 150 CSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVL 188
>At2g15345.1 68415.m01755 expressed protein
Length = 121
Score = 29.9 bits (64), Expect = 0.93
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +2
Query: 158 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 298
GLV++ QQ R G K L ++GL + Y LKK R+C KE+ + +E
Sbjct: 3 GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 236 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENI 352
++ R E+A NGT+ EH YGE + +R I
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKI 467
>At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; contains Pfam profile PF01535:
PPR repeat (three copies)
Length = 864
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -3
Query: 253 HDLLQVIFRGKALHRSQRLT-PVSLLDTDVD*TILNVVLRAFDSIGEWVECV-EILDG 86
H++LQ+ R A+ ++ + +D + D T+LNV++ A+ G +VE ++ DG
Sbjct: 57 HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCG-FVELARQVFDG 113
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 10 SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIRPIRRCYQKLGGRRSRWFSPRPYPATK 189
+D + VV + T RP++++ + + PI+R +KL R+ S P P+ K
Sbjct: 604 NDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVRK---LSGGPAPSFK 660
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 146 DVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHP 304
D + ++H N T +Q LSSE L KI KEF C+G V P
Sbjct: 269 DSERWILHSTPDYANSVIAKTGLQKLSSE-TLNKISEEMFKEFQCSGLVSSLP 320
>At5g45360.1 68418.m05569 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 316
Score = 26.6 bits (56), Expect = 8.7
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -3
Query: 346 LSLVALKLQHLAVLRVLHDRTVAR--ELLLACPHDLLQVIFRGKALHRSQRLTPVSLLDT 173
L+L + KL+ A ++ DR EL+ CP D + +A RSQ P ++D
Sbjct: 121 LTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHMQAAKRSQAPLPSQMVDD 180
Query: 172 DV--D*TILNVV 143
+ D T+L V
Sbjct: 181 RIILDNTVLEQV 192
>At1g55620.2 68414.m06367 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 781
Score = 26.6 bits (56), Expect = 8.7
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -3
Query: 337 VALKLQHLAVLRVLHDRTV--ARELLLACPHDLLQVIFRGKALHRSQRLTPVSLLDTDVD 164
++ + Q +L D TV A+EL+ A L V+ RG+ +H+ +R + LL D
Sbjct: 694 ISYRGQERGLLTCYPDATVGVAKELMEARGVKQLPVVKRGEVIHKGKRRKLLGLLHYDSI 753
Query: 163 *TILNVVLRAFDSIGEWVECVEI-LDGH 83
T L + SI + + E+ +GH
Sbjct: 754 WTFLRDEMSRRRSINDRRKDKEVGTNGH 781
>At1g55620.1 68414.m06366 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 585
Score = 26.6 bits (56), Expect = 8.7
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -3
Query: 337 VALKLQHLAVLRVLHDRTV--ARELLLACPHDLLQVIFRGKALHRSQRLTPVSLLDTDVD 164
++ + Q +L D TV A+EL+ A L V+ RG+ +H+ +R + LL D
Sbjct: 498 ISYRGQERGLLTCYPDATVGVAKELMEARGVKQLPVVKRGEVIHKGKRRKLLGLLHYDSI 557
Query: 163 *TILNVVLRAFDSIGEWVECVEI-LDGH 83
T L + SI + + E+ +GH
Sbjct: 558 WTFLRDEMSRRRSINDRRKDKEVGTNGH 585
>At1g29710.1 68414.m03631 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 475
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = -3
Query: 151 NVVLRAFDSI---GEWVECVEILD 89
NV + FDS+ G W E VE+LD
Sbjct: 85 NVTIETFDSLCIQGNWREAVEVLD 108
>At1g04200.1 68414.m00410 expressed protein Contains similarity to
gb|Z69902 from C. elegans
Length = 732
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 10 SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIR-PIRRCYQKLG 141
SD+ + + + R VE R V+ HP H+R P + LG
Sbjct: 322 SDNTFSKALANARDVEFDRSDVEGNAHPAGPHVRIPFASLFDTLG 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,379
Number of Sequences: 28952
Number of extensions: 206700
Number of successful extensions: 673
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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