Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A12f
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    30   0.24 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.7  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   8.9  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
 Frame = +2

Query: 290 LAEAIYFSVDPYQRMKLGN------VYPCDM----IGGQIARVIESKNTEYPVGTLVMGH 439
           L + IY SVDPY RM++ +      + P ++        +A+V++S   +Y  G  V+  
Sbjct: 47  LLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFV 106

Query: 440 FGWRTHTITKPE 475
            GW  +T    +
Sbjct: 107 SGWEEYTFVSKQ 118


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 510 LSSRVLLTELSFSGLVIVCVL 448
           L S   L++ SFSGL+IVC++
Sbjct: 578 LGSNHDLSKSSFSGLIIVCLI 598


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 223 TNKWVYYYYFFRYNHIFDK 167
           T  W Y Y+F +Y+   DK
Sbjct: 201 TMNWFYLYHFEQYSRFLDK 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,938
Number of Sequences: 5004
Number of extensions: 39700
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)