Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A12f
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 40 0.001
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 40 0.002
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 39 0.003
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 31 0.55
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 31 0.73
07_01_0229 - 1672126-1673976,1674427-1675404 30 1.3
03_06_0562 + 34732027-34733121 29 2.9
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 28 5.1
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 27 6.8
03_03_0011 - 13716864-13716968,13717102-13717153,13717588-137177... 27 6.8
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 39.9 bits (89), Expect = 0.001
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Frame = +2
Query: 179 MVIAKKIIVVNPFV-GVPKHNDFDI-VXXXXXXXXXXXFLAEAIYFSVDPYQ--RMK--- 337
M + + + V V G+P +DF++ L +Y SVDPYQ RMK
Sbjct: 1 MEVESRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRRS 60
Query: 338 -----LGNVYPCDMIGGQIA-RVIESKNTEYPVGTLVMGHFGWRTHTITKP 472
+ + P + I A V+ S EY G +V G GW +T+ +P
Sbjct: 61 ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRP 111
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Frame = +2
Query: 191 KKIIVVNPFVGVPKHNDFDIV------XXXXXXXXXXXFLAEAIYFSVDPYQRMKL---- 340
KKI++ N G PK +D ++V L + +Y S DPY R ++
Sbjct: 6 KKIVLRNHVTGFPKESDMELVAATGAAPSRVPEGTDGAVLVKNLYLSCDPYMRGRMSSHD 65
Query: 341 GNVYPCDMIGGQI-----ARVIESKNTEYPVGTLVMGHFGWRTHTITK 469
G+ ++G I +V++S + + G LV G GW +++ K
Sbjct: 66 GSYVDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTGWEEYSLIK 113
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 38.7 bits (86), Expect = 0.003
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Frame = +2
Query: 191 KKIIVVNPFVGVPKHNDFDIVXXXXXXXXXXXFLAEAI-----YFSVDPYQRMKLGN--- 346
K++I+ G+ +D ++V +EA+ Y S DPY R ++
Sbjct: 8 KRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNRMTRHEV 67
Query: 347 -VYPCDMIGGQIA------RVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENESSVN 493
Y D I G++ RVI S + ++ G LV G GW +T I PE+ +N
Sbjct: 68 PSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESLFRIN 124
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 377 IARVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENESSVNKT 499
+ARV++S + + G +V G GW ++ I +PE S + ++
Sbjct: 120 VARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPEQLSKIQQS 161
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 341 LVSFFDKDR--H*SILLLLETHFLVIRKVPLELYQNH 237
L S F K R H +L LLE+HFL+ P+E+ NH
Sbjct: 729 LKSLFGKARVGHFEMLKLLESHFLMSEVSPVEIDDNH 765
>07_01_0229 - 1672126-1673976,1674427-1675404
Length = 942
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 451 SPAKVTHNQCPNRILGIFTFNNSGNLSTNHITRIYI 344
+P+ + P + LG+F ++N+GNLS NH+ + I
Sbjct: 387 APSSNFSDALPAQYLGLFNYSNNGNLS-NHVFAVEI 421
>03_06_0562 + 34732027-34733121
Length = 364
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 139 IQSHQITETFCRKYGYSEKNNSSKPICW 222
+Q H+ E FC+ G+ E+ S P CW
Sbjct: 257 VQEHEGDEEFCKSLGFDER---SDPQCW 281
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 375 KLPELLKVKIPSILLGHWLWVTLAGEH-IQSLNQRMKALSTK 497
K E+LKV + +L G +V G+H + S+ Q++ +L K
Sbjct: 727 KQKEILKVVVTEVLGGGKFYVQTVGDHRVASIQQQLASLKLK 768
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 253 NYIKIIMFGYTNKWVYYYYFFR 188
+Y+ +I+FG W+Y YF R
Sbjct: 734 SYLPVILFGIYMSWIYLRYFQR 755
>03_03_0011 -
13716864-13716968,13717102-13717153,13717588-13717719,
13718289-13718491,13718584-13718695,13719308-13719474,
13720059-13720119,13720527-13720645,13720911-13720943
Length = 327
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 253 NYIKIIMFGYTNKWVYYYYF 194
+YI II+FG W+Y YF
Sbjct: 186 SYIPIILFGIYLSWIYLRYF 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,024
Number of Sequences: 37544
Number of extensions: 206479
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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