Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A12f
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       29   3.0  
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)              27   9.2  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
 Frame = +2

Query: 290 LAEAIYFSVDPYQRMKL------GNVYPCD----MIGGQIARVIESKNTEYPVGTLV-MG 436
           L + +Y SVDPY R ++      G + P +    + GG + RV ESK+ ++ VG +V   
Sbjct: 43  LVKTLYLSVDPYMRSRMNEGGSVGYIAPFEIGKVLSGGGVGRVEESKSDKFSVGDIVECF 102

Query: 437 HFGWRTHTITKPENESSVNK 496
            F W+ H    PE+  S+ K
Sbjct: 103 GFPWQ-HYCVLPEDHQSLRK 121


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 404 TEYPVGTLVMGHFGWRTHTITKPENESSVN 493
           T YP G  + GH+ WR      PEN    N
Sbjct: 174 TAYPTGLAITGHY-WRFPVYASPENVMGCN 202


>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
          Length = 563

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 22  QIDKLRHQRLNIKSLFYVKDNSNSSHTA 105
           QID+LR Q  +     Y K++SNSS TA
Sbjct: 452 QIDRLRCQETSADLEDYQKESSNSSSTA 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,300
Number of Sequences: 59808
Number of extensions: 279111
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)