Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A09f
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 258 TFVFILCVFLW 226
           T VF+ C+F+W
Sbjct: 217 TKVFVTCIFIW 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 258 TFVFILCVFLW 226
           T VF+ C+F+W
Sbjct: 217 TKVFVTCIFIW 227


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 5   SAEKGKFVITQCLQHQRP 58
           SA KG+ VIT+ +   RP
Sbjct: 194 SATKGRLVITEPVGSVRP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,015
Number of Sequences: 438
Number of extensions: 1327
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)