Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A08f
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    29   2.1  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    28   3.7  
06_03_1145 - 28000012-28000022,28000119-28000290,28000381-280004...    28   3.7  

>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 224 FRFRFYISLIVYLALVHQVEQESTSNYTDCIGTVLKNESWK-WCC 93
           FRF  + S+  + A  +    E     +D +  V KN SW+ W C
Sbjct: 357 FRFAGFNSMHQHYAKNYDDTHEGAKTISDALSFVRKNRSWRFWIC 401


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 55  KSFAVTCQLIKSQQHHFQLSFLRTVPIQSV*F-DVDSCSTW 174
           + F V+C+L KS Q   QLS LRT+ +    + D + C  +
Sbjct: 675 EEFGVSCELGKSLQGFSQLSKLRTLKVHLFWWSDAEECQNY 715


>06_03_1145 -
           28000012-28000022,28000119-28000290,28000381-28000488,
           28000578-28002152
          Length = 621

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 200 LIVYLALVHQVEQESTSNYTDCIGTVLKNESWK-WCC 93
           L ++    +Q + E+    +D +  V KN+SW+ W C
Sbjct: 366 LHLHFVTFYQDDHEAAKTISDALNFVKKNKSWRFWIC 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,502
Number of Sequences: 37544
Number of extensions: 154502
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)