Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A08f
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    28   2.5  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 400 LNTNMNTCWCFINFNSS*IXPCYR*S*LFETLCLRRNMI--SVVD*FSIRA 254
           L  +  TC CF N  +  I PCY+     E  C R ++    V D  ++RA
Sbjct: 384 LENSNKTCLCFYNKKNEQIWPCYKEPEWEERKCSRLSIFHRGVKDRIALRA 434


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 9   CLLLKKRHFSIMFPP-KIFRGNVSTNKKSAAPFPAFVLENGSNTIC 143
           C LL K HF+  + P  +  G+V+    S  P  +  ++    T C
Sbjct: 618 CTLLNKEHFACCYSPGLVVEGSVTAEVSSECPIGSVEVDPRFGTSC 663


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,718
Number of Sequences: 27780
Number of extensions: 161554
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)