Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A07f
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 153 1e-38
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 85 5e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 71 7e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 3e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.002
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.070
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.16
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.49
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 0.49
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 2.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 4.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.6
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.1
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 25 6.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 153 bits (370), Expect = 1e-38
Identities = 68/73 (93%), Positives = 72/73 (98%)
Frame = +3
Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 287
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 288 RGILTLKYPIEHG 326
RGILTLKYPIEHG
Sbjct: 62 RGILTLKYPIEHG 74
Score = 69.3 bits (162), Expect = 2e-13
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IV NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 84.6 bits (200), Expect = 5e-18
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 305
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 306 KYPIEHG 326
+ PIE G
Sbjct: 72 QRPIERG 78
Score = 38.3 bits (85), Expect = 5e-04
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYN-ELRVAPEEHP 411
P I+ NW DME+IW + + + +L PEEHP
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 70.9 bits (166), Expect = 7e-14
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Frame = +3
Query: 114 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 287
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 288 RGILTLKYPIEHG 326
R +L +KYP+E+G
Sbjct: 62 RSLLQVKYPMENG 74
Score = 30.3 bits (65), Expect = 0.12
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAP 399
P I+ ++++M ++W +TF+ +L++ P
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 275
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 35.5 bits (78), Expect = 0.003
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 331 VTNWDDMEKIWHHTFYNELRVAPEEH 408
+ NWD ME+ W + + LR PE+H
Sbjct: 99 IENWDHMERFWQQSLFKYLRCEPEDH 124
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 212
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 28.3 bits (60), Expect = 0.49
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 331 VTNWDDMEKIWHHTFYNELRVAPEEHP 411
V NWD +W + +L+ P EHP
Sbjct: 74 VENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 3e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 221
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 29.9 bits (64), Expect = 0.16
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 304 SNTPSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
+ +P +++NWD ME++ +TF +L + EHP
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHP 117
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.070
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 171 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 314
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.16
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 268 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 107
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.49
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 279 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 190
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 28.3 bits (60), Expect = 0.49
Identities = 25/77 (32%), Positives = 35/77 (45%)
Frame = -3
Query: 359 IFSMSSQLVTISVFDGVFEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARS 180
+ S++ T+ + F G +F CLI++IR +SH D EHG
Sbjct: 30 VSSLNKFQYTLPLLISNFAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-P 80
Query: 179 IISCETGLAHTGAIVYY 129
II C T L G I+YY
Sbjct: 81 IILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 271 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 155
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 153 TYRSHCLLPTRQLLRRTS*ISEI 85
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 308 FEGQDTSFALCLISYIRVLLSHTDHHA 228
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 4.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 213 RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGNR 332
R R + G+ K+S + +SKR + +LK+ + GNR
Sbjct: 364 RRRTGSLETGLYPKESPTPSKKRSKRVLWSLKHIVSPGNR 403
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 231 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 317
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 6.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 138 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 290
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAG 173
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 301 PSNTPSNTEIVTNWDDMEKIWHHT 372
PS+T + +TNWDD+ ++ T
Sbjct: 206 PSSTSNWWTSITNWDDLVRLERQT 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,784
Number of Sequences: 5004
Number of extensions: 42007
Number of successful extensions: 118
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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