Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A07f
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 162 1e-40
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 162 1e-40
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 162 1e-40
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 162 1e-40
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 162 1e-40
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 162 1e-40
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 162 1e-40
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 162 1e-40
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 161 2e-40
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 161 2e-40
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 161 2e-40
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 159 7e-40
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 155 9e-39
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 123 4e-29
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 79 9e-16
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 71 2e-13
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 60 8e-10
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 48 4e-06
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 33 0.061
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 32 0.14
U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical pr... 30 0.75
U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical pr... 30 0.75
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 3.0
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 27 4.0
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 27 4.0
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 27 4.0
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 27 4.0
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 27 4.0
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 27 4.0
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 26 9.2
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 26 9.2
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 26 9.2
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a... 26 9.2
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKI 360
P IVTNWDDMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 162 bits (393), Expect = 1e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKI 360
P IVTNWDDMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 161 bits (390), Expect = 2e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 161 bits (390), Expect = 2e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKI 360
P IVTNWDDMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 161 bits (390), Expect = 2e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 159 bits (386), Expect = 7e-40
Identities = 71/75 (94%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 155 bits (377), Expect = 9e-39
Identities = 71/73 (97%), Positives = 73/73 (100%)
Frame = +3
Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 287
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 288 RGILTLKYPIEHG 326
RGILTLKYPIEHG
Sbjct: 62 RGILTLKYPIEHG 74
Score = 70.9 bits (166), Expect = 3e-13
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELR+APEEHP
Sbjct: 70 PIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHP 102
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 123 bits (297), Expect = 4e-29
Identities = 56/57 (98%), Positives = 57/57 (100%)
Frame = +3
Query: 156 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 326
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 61
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 57 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 89
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 79.4 bits (187), Expect = 9e-16
Identities = 32/67 (47%), Positives = 49/67 (73%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 305
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ ++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 306 KYPIEHG 326
+YP+EHG
Sbjct: 71 EYPMEHG 77
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTF-YNELRVAPEEHP 411
P IV NW DMEKIW + F ++L++ PEEHP
Sbjct: 73 PMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHP 106
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 27 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 59
Score = 69.3 bits (162), Expect = 1e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 234 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 326
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 31
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 59.7 bits (138), Expect = 8e-10
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 299
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 300 TLKYPIEHG 326
+ YP+++G
Sbjct: 69 DINYPMDNG 77
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 307 NTPSNTEIVTNWDDMEKIWHHTFYNE-LRVAPEE 405
N P + IV NWDDM +W HTF E L + P+E
Sbjct: 71 NYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKE 104
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 47.6 bits (108), Expect = 4e-06
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 245
M ++ A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 246 GQKDSYVGDEAQSKRGI-LTLKYPIEHG 326
D ++GDEA S T+KYPI HG
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHG 88
Score = 33.9 bits (74), Expect = 0.046
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEH 408
P IV +WD ME+ W + LR PE+H
Sbjct: 84 PIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.5 bits (73), Expect = 0.061
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 209
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
Score = 29.5 bits (63), Expect = 0.99
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 328 IVTNWDDMEKIWHHTFYNELRVAPEEHP 411
++ +W+ EKI H++ N L P EHP
Sbjct: 98 LIEDWELFEKIVEHSYENILYSNPSEHP 125
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 32.3 bits (70), Expect = 0.14
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 292 PLLLCASSPT*ESFCPIPTITP*WRGLPTIEGN-TARGASSPAKPALHIPEPLSTTNAAT 116
PL++ +SS S TITP +G+PT N S+P P + STT A +
Sbjct: 464 PLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATS 523
Query: 115 SSS 107
++S
Sbjct: 524 TAS 526
>U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical
protein F33G12.6b protein.
Length = 680
Score = 29.9 bits (64), Expect = 0.75
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 288 FCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEH-HLLRNRPCTYRSHCL 133
FC + H++ + P R D +RG +++H RNRPC C+
Sbjct: 393 FCVIKKSEHENKENAHLPPREDRTLDVTTRGGEKDKHSEYARNRPCAASLPCV 445
>U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical
protein F33G12.6a protein.
Length = 771
Score = 29.9 bits (64), Expect = 0.75
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 288 FCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEH-HLLRNRPCTYRSHCL 133
FC + H++ + P R D +RG +++H RNRPC C+
Sbjct: 393 FCVIKKSEHENKENAHLPPREDRTLDVTTRGGEKDKHSEYARNRPCAASLPCV 445
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 156 KAGFAGDDAPRAVFPSIVGRPRHQG 230
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 313 PSNTEIVTN-WDDMEKIWHHTFYNELRVAPEEHP 411
P+ EIV++ WD + +W E +AP +HP
Sbjct: 453 PTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 486
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 313 PSNTEIVTN-WDDMEKIWHHTFYNELRVAPEEHP 411
P+ EIV++ WD + +W E +AP +HP
Sbjct: 494 PTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 527
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 206 RGKAPPSGRDGRYGTEG 256
RGKA +GRDGR G EG
Sbjct: 216 RGKAGHTGRDGRPGLEG 232
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 181 ASSPAKPALHIPEPLSTTNAATSS 110
+SSPA P++ P P +T++ +TSS
Sbjct: 652 SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 181 ASSPAKPALHIPEPLSTTNAATSS 110
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 181 ASSPAKPALHIPEPLSTTNAATSS 110
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 181 ASSPAKPALHIPEPLSTTNAATSS 110
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTF 375
P V NWD ++IW TF
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTF 375
P V NWD ++IW TF
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF 82
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -2
Query: 300 SGYLFCSVP---HLLHKSPSVPYRPSRPDGGAF 211
SG +F +P HLL + P P P+G +F
Sbjct: 694 SGEIFLKLPELAHLLSSQSTAPLHPKVPEGNSF 726
>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
assigned gene nameprotein 203 protein.
Length = 1220
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 GDDAPRAVFPS--IVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGNRH 335
G R + P +VG PR + +M+G ++ V + LT+ P+E H
Sbjct: 109 GKTGCRRIVPGHFLVGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLEAHKHH 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,914,897
Number of Sequences: 27780
Number of extensions: 252740
Number of successful extensions: 896
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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