Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A06f
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 1.9
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 26 1.9
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 2.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 4.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 4.3
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 5.7
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 24 7.6
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 24 7.6
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 10.0
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 24 10.0
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 382 SQYIFENLMYVRKHIEEFPKMSD 314
+Q IF +L++ +HIEEF + S+
Sbjct: 341 AQQIFRSLVFFLRHIEEFEEASE 363
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 279 SLCLFLVFLL-CMSDILGNSSICLRTYIKF 365
SL ++ VFLL C++++L + C R ++ F
Sbjct: 1586 SLYMYNVFLLQCLTELLSGYNACKRCFLNF 1615
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 270 GTTSLCLFLVFLLCMSDILGNSSI 341
GTTS+C+F LL ++I+ N+ I
Sbjct: 94 GTTSVCVFAAELLRQAEIMVNAKI 117
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 2.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 148 HLCNKAYYKVNDYLEDCTKWE 86
HL K+YY N ++ C WE
Sbjct: 242 HLVQKSYYLQNRHVFPCVHWE 262
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 325 KMSDIHNRNTRNKHKLVVPMSRLHKIRNSF 236
++ + N N NK KL ++R H+ ++F
Sbjct: 62 QLETVQNENEENKTKLAALLNRFHEETDNF 91
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -3
Query: 313 IHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHL 143
++ + R K + P+S + NS G + + P+ + + RFK T +E +
Sbjct: 213 LYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESI 269
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 322 MSDIHNRNTRNKHKLVVPMSRLHKIRNS 239
+SD+ N+ N ++V +S +H +RNS
Sbjct: 1574 LSDLDNKQQLNDQIIIVFVSWVHLLRNS 1601
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.2 bits (50), Expect = 7.6
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = -3
Query: 361 LMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNL 182
+M V H++ F K S + R KH+ + + K+ G L+ R D + L
Sbjct: 171 IMGVLTHLDLFKKTSTLREAKKRLKHRFWTELYQGAKLFYLSGVLNGRY-----PDREIL 225
Query: 181 HIHRFKKTIKEHLC---NKAYYKVNDYLEDCT 95
++ RF +K N+ Y + D +ED T
Sbjct: 226 NLSRFISVMKFRPLRWRNQHPYLLADRMEDLT 257
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 133 AYYKVNDYLEDCTKWE 86
+YY+VN Y C WE
Sbjct: 57 SYYRVNLYRSSCPLWE 72
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 10.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 370 FENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRL-HKIRNS 239
F++ +V KHI + S +HN N +N H+LV L H++R +
Sbjct: 413 FQSWGHVVKHITQ----SIMHNNNLKN-HELVSSAELLMHRVRQT 452
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 184 LHIHRFKKTIKEHLCNKAYY 125
LH+HRF + + E+L Y
Sbjct: 628 LHLHRFHELVSENLAKAVEY 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,809
Number of Sequences: 5004
Number of extensions: 33870
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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